Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10398
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    28   1.1  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   4.3  
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom...    26   4.3  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    26   4.3  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   5.7  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    25   7.5  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   7.5  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 316 FIGTYLLSAIVKHAHMIHVIDGKP*FCNDVI--IEFLK*KSTPFSECTLR 459
           +IG++ +  ++ H + + ++D     C D +  +EF+  KS  F +  LR
Sbjct: 16  YIGSHTVIELINHGYKVIIVDNLCNSCYDAVARVEFIVRKSIKFFKLDLR 65


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 79  RVCTRETPSMTSGPPPPAGDSPR 11
           RV     PS T GPPPP    P+
Sbjct: 414 RVTQGAPPSHTYGPPPPVQPKPK 436


>SPBC119.04 |mei3||meiosis inducing protein Mei3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 7   RFSVSPQPVAEARSSLTASPVCRHAGTVYWSSGTCRSSSNSAMS 138
           R S SP+    + S+ T +    HAGT + SS + R  S  A S
Sbjct: 27  RRSTSPRTSTGSSSTNTNTKTVDHAGTTFISSTSKRGRSTKAGS 70


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 205 GSWSRAGRGAEFGTRFKCFCFTIAL 279
           G W++A     +G + K F FTI L
Sbjct: 69  GRWAKATMKKNYGVKLKIFLFTILL 93


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = -3

Query: 164  DYKPPSKYNDIALLELDRQVPLDQYTVPACLHTGDAVNDERASATGWGL 18
            +++ P+ Y    L E +  VPLD  T+  C    D          GW +
Sbjct: 1318 EWRQPTGYKRTPLTECEGGVPLDAGTLHPCPGKEDDYYKAHPKPGGWSI 1366


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
          Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 1  EPRFSVSPQPVAEARSSLTASPV 69
          EP FS++P+P  E + +++ S +
Sbjct: 14 EPTFSITPEPTFETQPTISKSEI 36


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 242 PNSAPRPARDHEPVPPY 192
           PN+   P+RD+ P+PP+
Sbjct: 269 PNAEDAPSRDYIPLPPH 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,961
Number of Sequences: 5004
Number of extensions: 48119
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)