Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10397
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...   107   2e-24
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    31   0.21 
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    29   1.1  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   2.5  
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   5.8  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   5.8  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   7.7  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    26   7.7  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score =  107 bits (257), Expect = 2e-24
 Identities = 51/101 (50%), Positives = 70/101 (69%), Gaps = 4/101 (3%)
 Frame = +2

Query: 2   ELLSDQIKNFSRT----VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVN 169
           ELLSD       T    +NY DPN+N++ P+ SIHGNHDDP G G  S+LDIL +TGLVN
Sbjct: 97  ELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNHDDPSGDGRYSALDILQVTGLVN 156

Query: 170 YFGKWTDYTHVRISPVLLQKGLTRLALYDLAI*KIRDFHVF 292
           YFG+  +  ++ +SP+LLQKG T+LALY ++   +RD  ++
Sbjct: 157 YFGRVPENDNIVVSPILLQKGFTKLALYGIS--NVRDERLY 195



 Score = 75.8 bits (178), Expect = 7e-15
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = +1

Query: 256 LSHLKDQRLSRLFAEKKVEMERPDETLD-WFNLFVLHQNHADRGHSNYIPEGVLPNFLDL 432
           +S+++D+RL   F E KV+  RPD   D WFNL  +HQNH+    ++Y+PE  + +F D 
Sbjct: 186 ISNVRDERLYHSFRENKVKFLRPDLYRDEWFNLLTVHQNHSAHTPTSYLPESFIQDFYDF 245

Query: 433 VVWGHEHDSHICPMKGNKTEKDSFFV 510
           V+WGHEH+   C + G+      F V
Sbjct: 246 VLWGHEHE---CLIDGSYNPTQKFTV 268



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 38/83 (45%), Positives = 52/83 (62%)
 Frame = +3

Query: 474 EGK*NRERQLFCVQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKT 653
           +G  N  ++   VQPGST+ATSL+ GE  PKHCG+L I   +F L  + L+TVRPFI K 
Sbjct: 257 DGSYNPTQKFTVVQPGSTIATSLSPGETAPKHCGILNITGKDFHLEKIRLRTVRPFIMKD 316

Query: 654 IVLSEENIGSEDVNENEKVQEFL 722
           I+LSE +     V   ++V  +L
Sbjct: 317 IILSEVSSIPPMVENKKEVLTYL 339


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 512 YTKKLSFSVLFPFIGQIWLSCSWPHTTRS-KKFGST 408
           + ++ SF+ LFP   + +L   WPH TR+  KFG T
Sbjct: 48  FLEESSFATLFPKYREKYLREVWPHVTRALDKFGIT 83


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -2

Query: 601 KFPLCISNKPQCLGSASPAAKEVATVLP---GCTQKSCLSLFYFPSLDKYGYHAHGPTLQ 431
           + PLCI     CL S  P+ + ++ ++P   GC + S L++    S+   G       + 
Sbjct: 416 RVPLCIFQYMDCLKSKLPSGEFLSKIVPFIYGCFENSSLNV-QTTSIQILGTLLDIIDVT 474

Query: 430 DLKSLVALLLEYSYCVLCQHDFDV 359
            +KS +   L +S+ V  Q D  V
Sbjct: 475 TVKSSICPKLYHSFSVTNQLDVKV 498


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 511 TQKSCLSLFYFPSLDKYGYHAHGPTLQDLKSLVALLLEYSY 389
           T+K   S+ Y PS  +YG   +GP++ D+ ++ A++   S+
Sbjct: 271 TEKHVSSMEYAPS--EYGPSEYGPSINDITNMSAVIYPDSF 309


>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 134

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +1

Query: 334 LDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDLVVWGHEH 453
           +DW  +  L +N   RG+   I +G+   + +  ++G EH
Sbjct: 1   MDWEEVTKLEENEYKRGYDEGILKGIEQGYEEAFLFGLEH 40


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 547  QEKHFLSIVVY*KYIKEISS*LLCHCKQ*GLLYLKP 654
            Q K  +  V+   YIK +   LL  CKQ G+ YLKP
Sbjct: 1534 QNKLTVHSVLTFDYIKLMVQMLLQLCKQGGIQYLKP 1569


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 394 YIPEGVLPNFLDLVVWGHEHDSHICPMK 477
           ++PE +L NF+ L+ W     S   PMK
Sbjct: 296 FLPEAIL-NFIALMGWSSRQKSDFLPMK 322


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 23  KNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 139
           K ++  +N  D ++ I  P+L    N DD +G+  + +L
Sbjct: 110 KVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNL 148


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 167 NYFGKW--TDYTHVRISPVLL 223
           NYFG    TDY H+ ++P+LL
Sbjct: 168 NYFGNLDATDYPHLFLNPILL 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,419
Number of Sequences: 5004
Number of extensions: 72208
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)