Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10397
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 92 4e-19
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454... 83 4e-16
01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535 30 2.0
09_01_0093 - 1360596-1360625,1363562-1364266 29 6.2
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 8.1
04_04_0442 - 25229186-25229568,25229740-25232671 28 8.1
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 92.3 bits (219), Expect = 4e-19
Identities = 48/100 (48%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Frame = +2
Query: 2 ELLSDQIKNFSRT---VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNY 172
+++SDQ NF VNYEDPN N+ P+ +IHGNHDDP G ++S++DILS LVNY
Sbjct: 108 QVVSDQTINFPNRFGQVNYEDPNFNVGLPVFTIHGNHDDPAGVDNLSAIDILSACNLVNY 167
Query: 173 FGKW----TDYTHVRISPVLLQKGLTRLALYDLAI*KIRD 280
FGK + + + PVL++KG T +ALY L IRD
Sbjct: 168 FGKMDLGGSGVGEIAVYPVLVKKGTTFVALYGLG--NIRD 205
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Frame = +1
Query: 256 LSHLKDQRLSRLF-AEKKVEMERPD-----ETLDWFNLFVLHQNHADRGHSNYIPEGVLP 417
L +++D+RL+R+F V+ RP+ DWFN+ VLHQN + I E LP
Sbjct: 200 LGNIRDERLNRMFQTPHAVQWMRPETQDGMSVSDWFNILVLHQNRIKTNPKSAINEHFLP 259
Query: 418 NFLDLVVWGHEHDSHICPMK 477
FLD +VWGHEH+ I P +
Sbjct: 260 RFLDFIVWGHEHECLIDPQE 279
Score = 63.3 bits (147), Expect = 2e-10
Identities = 35/80 (43%), Positives = 48/80 (60%)
Frame = +3
Query: 513 QPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSEENIGSEDV 692
QPGS+VATSL GEA PKH LLEI ++ T +PL++VRPF + +VL +E D
Sbjct: 289 QPGSSVATSLIDGEAKPKHVLLLEIKGNQYRPTKIPLRSVRPFHYAEVVLKDE--VDVDP 346
Query: 693 NENEKVQEFLKTELMKLLMR 752
N+ V E L + L+ +
Sbjct: 347 NDQASVLEHLDKIVRNLIKK 366
>08_01_0522 -
4545166-4545174,4545295-4545447,4545566-4545727,
4545821-4545895,4545974-4546087,4546257-4546339,
4546496-4546556,4546664-4546726,4546804-4546908,
4547454-4547525,4547602-4547664,4547746-4547853,
4547937-4548039,4548131-4548207,4548335-4548403,
4548488-4548607,4548749-4548839,4549020-4549177,
4549696-4549834,4551164-4551186
Length = 615
Score = 82.6 bits (195), Expect = 4e-16
Identities = 43/100 (43%), Positives = 60/100 (60%), Gaps = 7/100 (7%)
Frame = +2
Query: 2 ELLSDQ---IKNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNY 172
+++SDQ ++N VN+EDPN NI P+ ++HG HD P G +S+ DILS VNY
Sbjct: 95 QVVSDQAACLQNRFGRVNFEDPNFNIGLPVFTVHGTHDGPAGVDGLSATDILSACNFVNY 154
Query: 173 FGK----WTDYTHVRISPVLLQKGLTRLALYDLAI*KIRD 280
FGK +D + + PV ++KG T +ALY L IRD
Sbjct: 155 FGKVDPGSSDVDQISVCPVFIKKGATSVALYGLG--NIRD 192
Score = 72.5 bits (170), Expect = 4e-13
Identities = 31/68 (45%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 LSHLKDQRLSRLF-AEKKVEMERPDETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDL 432
L +++D++LSR+ K++ + D DWFNLFV HQ +N I E +LP+FLDL
Sbjct: 187 LGNIRDEKLSRMLQTHYKIQWMKADSEDDWFNLFVFHQKRRKGSSTNGINEQLLPSFLDL 246
Query: 433 VVWGHEHD 456
V+WGHEH+
Sbjct: 247 VIWGHEHE 254
Score = 54.4 bits (125), Expect = 1e-07
Identities = 29/63 (46%), Positives = 42/63 (66%)
Frame = +3
Query: 510 VQPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSEENIGSED 689
+ PGS+VATSL+ EA PK+ LLEI +K T +PL++VRPF + + L ++ +G E
Sbjct: 270 IHPGSSVATSLSNAEAKPKNVVLLEIKGMQYKQTNIPLKSVRPFQYAEVQLKDQ-LGVEL 328
Query: 690 VNE 698
NE
Sbjct: 329 NNE 331
>01_03_0176 - 13461331-13461573,13464880-13465106,13465214-13465535
Length = 263
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 370 HADRGHSNYIPEGVLPNFLDLVVWGHEHDSHICP 471
H D+G ++PEGV P + +LV +H S++ P
Sbjct: 129 HQDKGPV-FLPEGVFPPYRNLVTGNKQHASNVPP 161
>09_01_0093 - 1360596-1360625,1363562-1364266
Length = 244
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 394 YIPEGVLPNFLDLVVWGHEHDSH 462
Y+P GV PN+ +LV+ +H S+
Sbjct: 189 YLPGGVFPNYRNLVIGNQQHASN 211
>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 275 RDFHVFLLKKKWKWRDPMK 331
R H +LL+ KWKW+ P K
Sbjct: 997 RSHHQWLLQFKWKWQKPWK 1015
>04_04_0442 - 25229186-25229568,25229740-25232671
Length = 1104
Score = 28.3 bits (60), Expect = 8.1
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +1
Query: 256 LSHLKDQRLSRLFAEKKVEMERPDETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDLV 435
+ LK+ + RL + + P E + NL V G G L N DL+
Sbjct: 191 IGRLKNLKTVRL-GQNAISGNIPVEIGECLNLVVFGLAQNKLGGPLPKEIGKLTNMTDLI 249
Query: 436 VWGHEHDSHICPMKGN 483
+WG++ S I P GN
Sbjct: 250 LWGNQLSSVIPPEIGN 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,554,371
Number of Sequences: 37544
Number of extensions: 420266
Number of successful extensions: 1010
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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