Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10395
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    28   1.9  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    26   7.5  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   10.0 
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   10.0 

>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 295 NTIMVDLPLTVLTWVRGPEPASNSHTLTLPVYLN 396
           N +++DL +    W   P+P    H++T  VY N
Sbjct: 335 NELVIDLVIENHKWTNAPKPVCVIHSVTPEVYKN 368


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 645 HQNPLRSFKDLSIHRDIGTEKPTLFY 722
           H NP+ + K    H     +K TLFY
Sbjct: 757 HPNPMTTLKRKGQHNSFSYDKSTLFY 782


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 495 RSEQGDSSLVERVRLLSGRDGQPHREQQLR 406
           ++E+ D S V+R+R    +D +P R+ +L+
Sbjct: 31  QTEEVDLSNVKRIRASRNQDNRPERQSRLQ 60


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 158 LEELHLQVTIPDPGAPTENAQTEWSFSVTGLKHR 259
           L  L + VTIP  G  T+N+   + +++TG+  R
Sbjct: 80  LSPLVMLVTIPFTGKETKNSIASYDWNLTGVAAR 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,804
Number of Sequences: 5004
Number of extensions: 62999
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)