Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10395
(832 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0) 87 2e-17
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.023
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 36 0.053
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0) 36 0.053
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0) 33 0.21
SB_34330| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_53772| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_25259| Best HMM Match : PhdYeFM (HMM E-Value=6.6) 30 2.6
SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36) 29 6.1
SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4) 29 6.1
SB_4785| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 8.1
>SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1091
Score = 87.0 bits (206), Expect = 2e-17
Identities = 45/87 (51%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
Frame = +2
Query: 2 DFAQRVTQL---AEVADAVAAKRLQNVPVWLGGLLNPEAYITATRQCVAQANSWSLEELH 172
DF+ R+ QL ++ A+A + L+N+ +WLGG+ PEAYITATRQ VAQAN+WSLEEL
Sbjct: 881 DFSDRIKQLQAISQAANASGSSGLKNLSIWLGGMFVPEAYITATRQFVAQANNWSLEELA 940
Query: 173 LQVTIPDPGAPTENAQTEWSFSVTGLK 253
L+VT+ + A + + SF VTGLK
Sbjct: 941 LEVTVAN-SASDKLKMDDCSFGVTGLK 966
Score = 73.7 bits (173), Expect = 2e-13
Identities = 41/79 (51%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 250 KTQGATVKGNRLLLTNTIMVDLPLTVLTWVR--GPEPASNSHTLTLPVYLNSARTELLFT 423
K QGA+ N+L LT TI DLPLT L W+R S +TLPVYLN +RTELLFT
Sbjct: 966 KLQGASCYNNQLELTTTISTDLPLTSLKWIRLLSSSDKPQSTMVTLPVYLNQSRTELLFT 1025
Query: 424 VRLPV-APGQEPHAFYERG 477
V + V H FYERG
Sbjct: 1026 VDMAVTGESARGHRFYERG 1044
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 46.4 bits (105), Expect = 3e-05
Identities = 25/82 (30%), Positives = 41/82 (50%)
Frame = +2
Query: 5 FAQRVTQLAEVADAVAAKRLQNVPVWLGGLLNPEAYITATRQCVAQANSWSLEELHLQVT 184
F + ++ E+ + L NV VWL G NP++++TA Q +A+ N W L+++ LQV
Sbjct: 4535 FVDLLLRIKELEQWTSDFCLPNV-VWLSGFFNPQSFLTAIEQSMARKNEWPLDKMALQVD 4593
Query: 185 IPDPGAPTENAQTEWSFSVTGL 250
+ N+ V GL
Sbjct: 4594 VTKKNKEDFNSPPREGAYVHGL 4615
>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 36.7 bits (81), Expect = 0.023
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 32 EVADAVAAKRLQNVPVWLGGLLNPEAYITATRQCVAQANSWSLEELHLQVTIPDP-GAPT 208
+V+D A R + +WLGGL NP A +T+ R A + +E+ L+ +I G+
Sbjct: 952 KVSDEPALGRARLKTIWLGGLANPAAIVTSLRHEKAAMSGVDYDEVSLRCSISKKYGSRD 1011
Query: 209 ENAQTEWSFSVTGL 250
+ + V+GL
Sbjct: 1012 SEGEEDDGIVVSGL 1025
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 35.5 bits (78), Expect = 0.053
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 77 VWLGGLLNPEAYITATRQCVAQANSWSLEELHLQVTI 187
+WL GL PE+Y+TA Q + + W L+ L T+
Sbjct: 2384 IWLSGLHIPESYLTALVQATCRKHGWPLDRSTLYTTV 2420
>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 670
Score = 35.5 bits (78), Expect = 0.053
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 77 VWLGGLLNPEAYITATRQCVAQANSWSLEELHLQVTI 187
+WL GL PE+Y+TA Q + + W L+ L T+
Sbjct: 344 IWLSGLHIPESYLTALVQATCRKHGWPLDRSTLYTTV 380
>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 1256
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = +2
Query: 80 WLGGLLNPEAYITATRQCVAQAN-SWSLEE--LHLQVT 184
W+ G NP+ ++TA RQ V +A+ W+L+ LH VT
Sbjct: 1112 WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVLHNDVT 1149
>SB_34330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 32.7 bits (71), Expect = 0.38
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 80 WLGGLLNPEAYITATRQCVAQAN-SWSLEELHL 175
W+ G NP+ ++TA RQ V +A+ W+L+ + L
Sbjct: 27 WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVGL 59
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 301 IMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVRLPVAPGQEPHAFYERGV 480
+ +LP+ + V P + PVY RT+L + L + Q P + RGV
Sbjct: 106 LFTNLPVVHVYAVNSTAP-KDPRLYQCPVYKKPQRTDLTYITPLWLKTVQNPDHWIMRGV 164
Query: 481 ALL 489
ALL
Sbjct: 165 ALL 167
>SB_53772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 32.3 bits (70), Expect = 0.50
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 80 WLGGLLNPEAYITATRQCVAQAN-SWSLEELHL 175
W+ G NP+ ++TA RQ V +A+ W+L+ + L
Sbjct: 35 WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVL 67
>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4994
Score = 32.3 bits (70), Expect = 0.50
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 80 WLGGLLNPEAYITATRQCVAQAN-SWSLEELHL 175
W+ G NP+ ++TA RQ V +A+ W+L+ + L
Sbjct: 4945 WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVL 4977
>SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 32.3 bits (70), Expect = 0.50
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 80 WLGGLLNPEAYITATRQCVAQAN-SWSLEELHL 175
W+ G NP+ ++TA RQ V +A+ W+L+ + L
Sbjct: 139 WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVL 171
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 301 IMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVRLPVAPGQEPHAFYERGV 480
+ +LP+ + V P + PVY RT+L + L + Q P + RGV
Sbjct: 218 LFTNLPVVHVYAVNSTAP-KDPRLYQCPVYKKPQRTDLTYITPLWLKTVQNPDHWIMRGV 276
Query: 481 ALL 489
ALL
Sbjct: 277 ALL 279
>SB_25259| Best HMM Match : PhdYeFM (HMM E-Value=6.6)
Length = 393
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = -2
Query: 540 KRGRVASNV*LVESSRSEQGDSSLVERVRLLSGRDGQPHREQQLRAGAVQVHGESQRVRI 361
KR ++ ++ + ES RS + +R + LS Q + + V++H S+ +
Sbjct: 106 KRAKIRQDLSMKESQRSRRNS----QRTQALSSSSTQTDNTETVARTVVEIHHSSKHPTV 161
Query: 360 GRGLRTANPSEHSKRQVYHDSV 295
P+ S V HD V
Sbjct: 162 PIATTNGRPTAQSITDVKHDLV 183
>SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 480 DSSLVER-VRLLSGRDGQPHREQQLRAGAVQVHGESQRVRIGRGLRTANPSEHSK 319
D S +R +RL DG R+ + A V+ E +R R G+R A PSE+S+
Sbjct: 14 DESFEDRSLRLSCDDDGDESRQPSVLARGVRTATEIERARKSTGVR-AEPSENSE 67
>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
Length = 1290
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -2
Query: 489 EQGDSSLVERVRLLSGRDGQPHREQQLRAGAVQVHGESQRVRIGRGLRTANPSEHSKRQ 313
E+ + L E V+LL R +Q +AG + G+ R R + +TA PSE + Q
Sbjct: 935 EEQNKELQEEVKLLEKYRLDLWRTEQDKAGNDENSGKETRPRKEKQRKTARPSEQPEYQ 993
>SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4)
Length = 497
Score = 28.7 bits (61), Expect = 6.1
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Frame = +1
Query: 277 NRLLLTNTIMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVRLPVAPGQEP 456
NR L+T ++ DL + VL R + S + P S+ TE+ P P
Sbjct: 5 NRKLVTGSLQEDLKIAVL---REHRKTTKSLRMIDPTIRRSSDTEV---------PPITP 52
Query: 457 HAFYERGVALLTSTALN*L-YITSDTPTLR 543
+AF+E V+LLT ++ L Y T +T R
Sbjct: 53 NAFWEWSVSLLTGILVSSLFYFTLETRASR 82
>SB_4785| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 623
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 382 PVYLNSARTELLFTVRLPVAPGQEPHAFYERGVALLTST 498
PVY RT+L + L + Q P + RGVALL T
Sbjct: 584 PVYKKPRRTDLEYIFCLNLKTVQHPDHWILRGVALLCDT 622
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,256,319
Number of Sequences: 59808
Number of extensions: 501102
Number of successful extensions: 1066
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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