Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10395
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04050.1 68418.m00386 maturase-related contains similarity to...    29   5.0  
At3g16630.2 68416.m02126 kinesin motor family protein similar to...    28   8.7  
At3g16630.1 68416.m02125 kinesin motor family protein similar to...    28   8.7  

>At5g04050.1 68418.m00386 maturase-related contains similarity to
           maturase proteins from several species
          Length = 567

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = +1

Query: 457 HAFYERGVALLTSTALN*LYITSDTPTLRFRNCNL*LISPLFNG---CYYTYKASSSITV 627
           H+FY RG++ L S++L  L     T +  F N +  +  PL           + S     
Sbjct: 8   HSFYNRGISFLVSSSLRNL----STASSLFLNSDQTITEPLVKSELEALVLKQYSHGKFY 63

Query: 628 SIKKNRIKIRCVVL 669
           S+ KN + + CV+L
Sbjct: 64  SLVKNAVSLPCVLL 77


>At3g16630.2 68416.m02126 kinesin motor family protein similar to
           mitotic centromere-associated kinesin GB:AAC27660 from
           [Homo sapiens]; contains Pfam profile PF00225: Kinesin
           motor domain
          Length = 794

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +2

Query: 2   DFAQRVTQLAEVADAVAAKRLQNVPVW---LGGLLNPE-AYITATRQCVAQANSWSLEEL 169
           +F Q  ++ A      A+++ +  P     L  LL  E A I A R+ +        EE+
Sbjct: 677 NFRQNASETASRQYETASRQYETDPSLDENLDALLEEEEALIAAHRKEIEDTMEIVREEM 736

Query: 170 HLQVTIPDPGAPTENAQTEWSFSVTGLKHRALLS 271
            L   +  PG+  EN  T+ SF V   K   L+S
Sbjct: 737 KLLAEVDQPGSMIENYVTQLSF-VLSRKAAGLVS 769


>At3g16630.1 68416.m02125 kinesin motor family protein similar to
           mitotic centromere-associated kinesin GB:AAC27660 from
           [Homo sapiens]; contains Pfam profile PF00225: Kinesin
           motor domain
          Length = 794

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = +2

Query: 2   DFAQRVTQLAEVADAVAAKRLQNVPVW---LGGLLNPE-AYITATRQCVAQANSWSLEEL 169
           +F Q  ++ A      A+++ +  P     L  LL  E A I A R+ +        EE+
Sbjct: 677 NFRQNASETASRQYETASRQYETDPSLDENLDALLEEEEALIAAHRKEIEDTMEIVREEM 736

Query: 170 HLQVTIPDPGAPTENAQTEWSFSVTGLKHRALLS 271
            L   +  PG+  EN  T+ SF V   K   L+S
Sbjct: 737 KLLAEVDQPGSMIENYVTQLSF-VLSRKAAGLVS 769


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,680,302
Number of Sequences: 28952
Number of extensions: 331184
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)