Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10394
         (574 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0406 + 24978845-24978970,24979073-24979142,24979541-249795...    29   3.5  
09_02_0454 + 9514706-9515776                                           28   6.1  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   6.1  

>04_04_0406 +
           24978845-24978970,24979073-24979142,24979541-24979556,
           24979813-24979930,24980015-24980137,24980249-24980408,
           24980470-24980546,24980635-24980687,24981263-24981317,
           24981664-24981858
          Length = 330

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 287 WFQVCRQCSCNVASTHSNNNVRLVVVVESLLQLTSFATHDAVGSLEIVVV 138
           W  +  Q   +    H NN V L V+ ESLLQ        +  ++ +++V
Sbjct: 248 WDVLANQAVVDFVRLHLNNGVELSVICESLLQEAITRDPPSTDNMSVILV 297


>09_02_0454 + 9514706-9515776
          Length = 356

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -3

Query: 170 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 69
           D VGS  +V V      V     D R VLCRGG+
Sbjct: 187 DHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGA 220


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 573 FFFFFFISNELYC 535
           FFFFFF S ++YC
Sbjct: 102 FFFFFFFSGDVYC 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,938,530
Number of Sequences: 37544
Number of extensions: 273228
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)