Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10394
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0) 30 1.2
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 30 1.2
SB_52932| Best HMM Match : Ank (HMM E-Value=0) 29 2.0
SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 4.7
SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 28 6.2
SB_26806| Best HMM Match : Annexin (HMM E-Value=0) 27 8.2
>SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 96 KIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIV--AVRGSYVTRTL 269
++ +SE +SP +Y+ F+++N E+ + K++ +NK V + S T +
Sbjct: 148 RVTKSESLSSPSNSYSQAFKSNNSR-EEESLDPKKSSGTENKSFETVKGSESRSKETPAV 206
Query: 270 TANLKPLRTSL 302
TAN+K LRT +
Sbjct: 207 TANIKELRTQI 217
>SB_13545| Best HMM Match : Peptidase_M49 (HMM E-Value=0)
Length = 488
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 108 SEFDASPDGAYNYNFETSNGIVRSETGE 191
+E DA PDG+YN++ ++ +V +ETGE
Sbjct: 218 TEEDAKPDGSYNFDHKS---VVNTETGE 242
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 192 LKEALDDDNKPHVIVAVRG---SYVTRTLTANLKPLR 293
+K+AL NKPHV++A G ++ T T NLK ++
Sbjct: 116 MKQALSLANKPHVVIATPGRLADHIKSTDTLNLKKIQ 152
>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
Length = 1266
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 159 SNGIVRSETGELKEALDDDNKPHVIVAVRGSYVTRTLTANLKPLRTSLTRLDTMLRVNLF 338
S + + TG K LDD KPHV+ ++ SY+ L + LR LTR + L
Sbjct: 204 SKTVTKMFTGFRKLTLDDLRKPHVVKDIQ-SYILNRLDDD-SELRKHLTRETAEIFNQLH 261
Query: 339 LRS 347
++S
Sbjct: 262 IKS 264
>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 75 PPTEDYPKIVRSEFDASPDGAY 140
PPT+DY + RS+ D S DG Y
Sbjct: 17 PPTKDYDRRSRSQDDDSDDGCY 38
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 28.3 bits (60), Expect = 4.7
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Frame = -3
Query: 284 FQVCRQCSCNVASTHSNNNVRLVVVVESLLQLTSFATHDAVG-SLEIVVVSSIGAGVEFR 108
F +CR C C ++ N + V + H+ VG + E V G +
Sbjct: 324 FPLCRPCRCYGHASSCNPKTGVCVDCQ----------HNTVGKNCEACAVGFYGIATKGT 373
Query: 107 PNDLRVVLCRGGSDDGSHKGESYND 33
PND + C GGS Y D
Sbjct: 374 PNDCKRCQCPGGSSGNKFSESCYVD 398
>SB_24669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 113 IRRQPRWSLQLQFRDFQRHRA*RNW*AEGGSRRRQ 217
+RR+ WS+Q++ + RH + W GG ++R+
Sbjct: 3 VRRKDAWSMQVRQVEHPRHSYVQMWRKFGGPKKRE 37
>SB_22561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 111 EFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 239
E D+ YNY+ NG+ S+ G+L DN HV+ A
Sbjct: 65 EPDSEQADGYNYDTSHHNGVATSQRGQLARLAMGDNN-HVLNA 106
>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 756
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 197 GGSRRRQQASRYCCCA 244
GGSRRR S++CC A
Sbjct: 97 GGSRRRNSKSKFCCFA 112
>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
Length = 829
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -3
Query: 221 LVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGSDDGSHKGES 42
LV ++S Q+T+ H A+ + + + V+ + AG + R+ L R S G + ES
Sbjct: 274 LVKAIQSPTQMTADKLHSALQNKDTLTVARMIAGADPTARFFRMRLARDTSATGVVECES 333
Query: 41 YND 33
+D
Sbjct: 334 ADD 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,748,393
Number of Sequences: 59808
Number of extensions: 309385
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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