Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10391
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 136 1e-32
07_01_0756 + 5819367-5820038,5820847-5821005 132 2e-31
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 46 3e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 7e-04
01_01_1108 + 8758486-8758815,8758913-8758960,8761512-8761664,876... 29 2.1
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.8
11_01_0395 + 2999855-2999920,3000605-3002191 28 6.5
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 6.5
08_02_1290 - 25927667-25928950 28 6.5
01_06_1015 + 33819203-33821827 28 6.5
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 27 8.7
02_02_0419 - 10009686-10012568 27 8.7
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 136 bits (330), Expect = 1e-32
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +1
Query: 256 ESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIG 435
E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+G
Sbjct: 63 EEIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVG 121
Query: 436 LGVKCSKEVATAIRGAIILAKLSV 507
LGVKC+KEVATAIRGAIILAKLSV
Sbjct: 122 LGVKCAKEVATAIRGAIILAKLSV 145
Score = 74.9 bits (176), Expect = 4e-14
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR
Sbjct: 146 VPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVR 177
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/24 (58%), Positives = 22/24 (91%)
Frame = +2
Query: 182 KEDQKEWVPVTKLGRLVREGKIDK 253
++++++WVPVTKLGRLV+EG+ K
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSK 61
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 132 bits (320), Expect = 2e-31
Identities = 64/89 (71%), Positives = 75/89 (84%)
Frame = +1
Query: 241 KNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 420
K + E IYL SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 421 NGHIGLGVKCSKEVATAIRGAIILAKLSV 507
+GH+GLGVKC+KEVATAIRGAIILAKLSV
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSV 148
Score = 76.6 bits (180), Expect = 1e-14
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 149 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 180
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = +2
Query: 182 KEDQKEWVPVTKLGRLVREGKIDK 253
++++++WVPVTKLGRLV+E KI K
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHK 64
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +1
Query: 328 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 483
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKA 222
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +1
Query: 400 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 495
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
Score = 34.7 bits (76), Expect = 0.057
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3
Query: 546 KPHTVPCKVTGKCGSVTVR 602
KPHTV CKV K GSVTVR
Sbjct: 47 KPHTVSCKVADKYGSVTVR 65
>01_01_1108 +
8758486-8758815,8758913-8758960,8761512-8761664,
8761749-8761847,8761884-8761991,8762078-8762200,
8763030-8763287
Length = 372
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 331 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNN-GHIGLGVKCSKEVATAIRGAIILAKLSV 507
+E + M + K RA Q+ RF F +G NN GH ++ S EVA A R +IIL +
Sbjct: 210 EEEISGMGMSKVIRADQK-RF--FFDLGSNNRGHY---LRIS-EVAGADRSSIILPLSGL 262
Query: 508 YQFEEVTG 531
QF E+ G
Sbjct: 263 KQFHEMVG 270
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 462 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 346
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>11_01_0395 + 2999855-2999920,3000605-3002191
Length = 550
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 268 LFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRT 387
+F +++ ++IDF L L D + I+P+ R G++T
Sbjct: 237 MFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKT 276
>09_04_0594 - 18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 190 PERVGSCHQTRPSCSRRKNRQTESIYLFSLPIKEFEIIDFFLGPS--LNDEVLKIMPVQK 363
P + CHQ + R T +I S ++E D GPS + + +L P+
Sbjct: 826 PVHLHDCHQAAFGDFQGSQRATFNIANLSTMVQESPNFDLQTGPSNQITESILTTEPMNG 885
Query: 364 QTRAGQRT 387
+T A + T
Sbjct: 886 ETNAVEET 893
>08_02_1290 - 25927667-25928950
Length = 427
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -3
Query: 528 SNLFELVNRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 373
S L LV SKD + SGD L H+ + VA +CL L+G
Sbjct: 291 SQLGALVVALSSKDGKSFANSGDLLVTPHSHSAAAAGVAITTRCLYPRRLAG 342
>01_06_1015 + 33819203-33821827
Length = 874
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 237 KEKSTNREHLLV----FFTNQRIRDH*FLPRPVPE**GSKDHACTETNTCRTA 383
KE T R+ LLV +FT + I +H +P P + GSK T T RTA
Sbjct: 3 KEYLTKRKFLLVLDNAYFTEENILEHMGIPHPRQQNIGSK--VIVTTRTRRTA 53
>11_04_0474 + 18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 238 RKNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTR--AGQRTRFKAFVAI 411
R R + SL + E +FF P+LND ++ + +Q R G R F +
Sbjct: 1259 RDERPEDGTLASSLAVIERIHKNFFSHPNLNDADVRSILASEQQRILGGCRIVFSRIFPV 1318
Query: 412 GDNNGHI 432
G+ N H+
Sbjct: 1319 GEANPHM 1325
>02_02_0419 - 10009686-10012568
Length = 960
Score = 27.5 bits (58), Expect = 8.7
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -3
Query: 483 SASNGSGDFLAALHTQTNMTVVVANGNKCLETCALS-GTCLFLYRHDL*NLIIQGR-AEE 310
SA N SG + + +T++ + NK L G+ L R L N ++ G +EE
Sbjct: 355 SAVNMSGHLPKWIGEMSELTILDLSFNKLSGEIPLGIGSLSNLTRLFLHNNLLNGSLSEE 414
Query: 309 EINDLEFFDW*RKQVNALGLSIFPS 235
DL +W +N L + I PS
Sbjct: 415 HFADLVSLEWIDLSLNNLSMEIKPS 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,076,003
Number of Sequences: 37544
Number of extensions: 324598
Number of successful extensions: 988
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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