Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10391
(602 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 3e-40
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 31 0.54
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097) 31 0.54
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 2.2
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 2.9
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 2.9
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 2.9
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 2.9
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 5.1
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 5.1
SB_3036| Best HMM Match : Metallothionein (HMM E-Value=0.81) 28 6.7
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 27 8.8
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15) 27 8.8
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 161 bits (392), Expect = 3e-40
Identities = 79/89 (88%), Positives = 83/89 (93%)
Frame = +1
Query: 241 KNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 420
K + E IYLFSLPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+
Sbjct: 22 KIKTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDS 81
Query: 421 NGHIGLGVKCSKEVATAIRGAIILAKLSV 507
NGH+GLGVKCSKEVATAIRGAIILAKLSV
Sbjct: 82 NGHVGLGVKCSKEVATAIRGAIILAKLSV 110
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIGKPHTVPCKVTGKCGS VR
Sbjct: 111 IPVRRGYWGNKIGKPHTVPCKVTGKCGSTRVR 142
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 200 WVPVTKLGRLVREGKI 247
WVPVTKLGRLV++ KI
Sbjct: 8 WVPVTKLGRLVKDLKI 23
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 501 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 322
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 292
Query: 321 RAEEEI 304
R ++E+
Sbjct: 293 RNQDEL 298
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 31.5 bits (68), Expect = 0.54
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 501 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLIIQG 322
++ + NS N D TNMT + + G CL + TC+ L DL NL+ +
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLMSRS 576
Query: 321 RAEEEI 304
R ++E+
Sbjct: 577 RNQDEL 582
>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
Length = 629
Score = 31.5 bits (68), Expect = 0.54
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 358 QKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVYQFEEVTGVT 537
+KQT Q+ R KA +G + G+GV+ +K + + +L VY +E + V
Sbjct: 56 EKQTEKIQQERHKALEDMGISIQSSGIGVEKNKFYLVNLNADPAMNELLVYYLKEHSKVG 115
Query: 538 RSE-SHTPSL 564
R + +HTP +
Sbjct: 116 RLDANHTPDI 125
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 474 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 343
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 328 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 441
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 328 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 441
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 328 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 441
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 328 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 441
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 328 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 441
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 328 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 441
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 5.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 378 TAHTFQGICCHWRQQRSYW 434
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 376 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 465
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_3036| Best HMM Match : Metallothionein (HMM E-Value=0.81)
Length = 597
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +3
Query: 360 ETNTC--RTAHTFQGICCHWRQQRSYWFG-CEVQQGSRHCHSRRYYPC*VVCLPVRRGYW 530
E TC + ++G C + +R Y G C VQ G+ RR Y + VRR Y
Sbjct: 113 EGGTCSVQVRRVYEGGTCSVQVRRVYEGGTCSVQGGTCSVQVRRAYEGGTCSVQVRRAYE 172
Query: 531 G 533
G
Sbjct: 173 G 173
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 207 LSPNSAVLFAKEKSTNREHLLVFFTNQR 290
L PNS V KEK N H L TN R
Sbjct: 550 LPPNSVVPILKEKLENMRHKLPVITNLR 577
>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
Length = 1277
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/66 (21%), Positives = 29/66 (43%)
Frame = +1
Query: 229 CSRRKNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVA 408
C+ + + +Y+ I + F P NDE+L ++ K ++ R + + ++
Sbjct: 13 CAMDRKPSPDPVYVLRGTIGSVNALKFVPKPISNDEMLVVINDLKTSKVAHRLKPQDHMS 72
Query: 409 IGDNNG 426
G N G
Sbjct: 73 FGSNPG 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,673,767
Number of Sequences: 59808
Number of extensions: 378570
Number of successful extensions: 1130
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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