Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10391
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 132 1e-31
Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 28 4.5
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 4.5
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 28 4.5
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 4.5
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 27 7.8
AC199158-8|ABO33283.1| 439|Caenorhabditis elegans Hypothetical ... 27 7.8
AC199158-4|ABO33286.1| 439|Caenorhabditis elegans Hypothetical ... 27 7.8
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 27 7.8
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 132 bits (320), Expect = 1e-31
Identities = 69/90 (76%), Positives = 75/90 (83%)
Frame = +1
Query: 238 RKNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 417
+K E IYL SLPIKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD
Sbjct: 70 KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGD 128
Query: 418 NNGHIGLGVKCSKEVATAIRGAIILAKLSV 507
+ GH+GLGVKCSKEVATAIRGAI+ AKL+V
Sbjct: 129 HAGHVGLGVKCSKEVATAIRGAIVAAKLAV 158
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIG PHTVPCKVTGKC SV VR
Sbjct: 159 VPVRRGYWGNKIGLPHTVPCKVTGKCASVMVR 190
Score = 35.9 bits (79), Expect = 0.022
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 185 EDQKEWVPVTKLGRLVREGKI 247
E + EW PVTKLGRLV+E KI
Sbjct: 52 EKETEWTPVTKLGRLVKEKKI 72
>Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical
protein M05D6.7 protein.
Length = 409
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 215 KLGRLVREGKIDKPRAFTCFLYQSKNSRSL 304
K+G ++REGK++K + +Y+ NS+SL
Sbjct: 107 KIGNIIREGKVEKNVSNDNKIYELWNSKSL 136
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -3
Query: 540 SCYPSNLFELVNRQLSKDNSASNGSG--DFLAALHTQTNMTVVVANGNKCLETCALSGTC 367
S Y L L Q S++ +A++G F + L N V N+C C+ G+C
Sbjct: 156 SVYGKQLAALCGEQPSQEFTAASGKALVHFFSDLAINLNGFNVSYESNRCAYNCSNHGSC 215
Query: 366 L 364
L
Sbjct: 216 L 216
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -3
Query: 540 SCYPSNLFELVNRQLSKDNSASNGSG--DFLAALHTQTNMTVVVANGNKCLETCALSGTC 367
S Y L L Q S++ +A++G F + L N V N+C C+ G+C
Sbjct: 156 SVYGKQLAALCGEQPSQEFTAASGKALVHFFSDLAINLNGFNVSYESNRCAYNCSNHGSC 215
Query: 366 L 364
L
Sbjct: 216 L 216
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 339 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 482
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -3
Query: 540 SCYPSNLFELVNRQLSKDNSASNGSG--DFLAALHTQTNMTVVVANGNKCLETCALSGTC 367
S Y L L Q S++ +A++G F + L N V N+C C+ G+C
Sbjct: 156 SVYGKQLAALCGEQPSQEFTAASGKALVHFFSDLAINLNGFNVSYESNRCAYNCSNHGSC 215
Query: 366 L 364
L
Sbjct: 216 L 216
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 339 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 482
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 24 DCLS-EPIVQQWRTLLQPVDVA 86
+CL+ E +VQ WR+LL P D +
Sbjct: 145 ECLTAEKLVQTWRSLLHPTDAS 166
>AC199158-8|ABO33283.1| 439|Caenorhabditis elegans Hypothetical
protein AC8.10 protein.
Length = 439
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 51 VERWALIDSQAQKKK 7
VERW+L+D Q +KKK
Sbjct: 242 VERWSLLDKQERKKK 256
>AC199158-4|ABO33286.1| 439|Caenorhabditis elegans Hypothetical
protein AC8.3 protein.
Length = 439
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 51 VERWALIDSQAQKKK 7
VERW+L+D Q +KKK
Sbjct: 242 VERWSLLDKQERKKK 256
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +3
Query: 24 DCLS-EPIVQQWRTLLQPVDVA 86
+CL+ E +VQ WR+LL P D +
Sbjct: 145 ECLTAEKLVQTWRSLLHPTDAS 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,491,590
Number of Sequences: 27780
Number of extensions: 269494
Number of successful extensions: 782
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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