Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10391
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 152 2e-37
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 151 3e-37
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 149 1e-36
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 149 1e-36
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 149 1e-36
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 149 1e-36
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 8e-06
At2g26960.1 68415.m03234 myb family transcription factor (MYB81)... 29 1.8
At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR al... 29 3.1
At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR al... 29 3.1
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 4.1
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 5.5
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 7.2
At3g01450.1 68416.m00069 expressed protein 27 7.2
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 9.6
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 152 bits (369), Expect = 2e-37
Identities = 70/87 (80%), Positives = 79/87 (90%)
Frame = +1
Query: 247 RQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 426
+Q E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 427 HIGLGVKCSKEVATAIRGAIILAKLSV 507
H+GLGVKCSKEVATAIRGAIILAKLSV
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSV 156
Score = 76.6 bits (180), Expect = 1e-14
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 157 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 188
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2
Query: 188 DQKEWVPVTKLGRLVREGKI 247
++++WVPVTKLGRLV G I
Sbjct: 50 EEEKWVPVTKLGRLVAAGHI 69
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 151 bits (366), Expect = 3e-37
Identities = 70/89 (78%), Positives = 80/89 (89%)
Frame = +1
Query: 241 KNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 420
K + E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+
Sbjct: 59 KITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDS 118
Query: 421 NGHIGLGVKCSKEVATAIRGAIILAKLSV 507
NGH+GLGVKCSKEVATAIRGAIILAKLSV
Sbjct: 119 NGHVGLGVKCSKEVATAIRGAIILAKLSV 147
Score = 76.2 bits (179), Expect = 2e-14
Identities = 30/32 (93%), Positives = 32/32 (100%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 148 VPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 179
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/22 (72%), Positives = 21/22 (95%)
Frame = +2
Query: 188 DQKEWVPVTKLGRLVREGKIDK 253
++++WVPVTKLGRLV+EGKI K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITK 62
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 149 bits (362), Expect = 1e-36
Identities = 70/89 (78%), Positives = 79/89 (88%)
Frame = +1
Query: 241 KNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 420
K + E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 126
Query: 421 NGHIGLGVKCSKEVATAIRGAIILAKLSV 507
NGH+GLGVKCSKEVATAIRGAIILAKLSV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSV 155
Score = 76.6 bits (180), Expect = 1e-14
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 156 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 187
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 188 DQKEWVPVTKLGRLVREGKIDK 253
++ +WVPVTKLGRLV + KI K
Sbjct: 49 EETKWVPVTKLGRLVADNKITK 70
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 149 bits (362), Expect = 1e-36
Identities = 70/89 (78%), Positives = 79/89 (88%)
Frame = +1
Query: 241 KNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 420
K + E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 126
Query: 421 NGHIGLGVKCSKEVATAIRGAIILAKLSV 507
NGH+GLGVKCSKEVATAIRGAIILAKLSV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSV 155
Score = 76.6 bits (180), Expect = 1e-14
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 156 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 187
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 188 DQKEWVPVTKLGRLVREGKIDK 253
++ +WVPVTKLGRLV + KI K
Sbjct: 49 EETKWVPVTKLGRLVADNKITK 70
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 149 bits (362), Expect = 1e-36
Identities = 70/89 (78%), Positives = 79/89 (88%)
Frame = +1
Query: 241 KNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 420
K + E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 126
Query: 421 NGHIGLGVKCSKEVATAIRGAIILAKLSV 507
NGH+GLGVKCSKEVATAIRGAIILAKLSV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSV 155
Score = 76.6 bits (180), Expect = 1e-14
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 156 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 187
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 188 DQKEWVPVTKLGRLVREGKIDK 253
++ +WVPVTKLGRLV + KI K
Sbjct: 49 EETKWVPVTKLGRLVADNKITK 70
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 149 bits (362), Expect = 1e-36
Identities = 70/89 (78%), Positives = 79/89 (88%)
Frame = +1
Query: 241 KNRQTESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 420
K + E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD
Sbjct: 67 KITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDG 126
Query: 421 NGHIGLGVKCSKEVATAIRGAIILAKLSV 507
NGH+GLGVKCSKEVATAIRGAIILAKLSV
Sbjct: 127 NGHVGLGVKCSKEVATAIRGAIILAKLSV 155
Score = 76.6 bits (180), Expect = 1e-14
Identities = 31/32 (96%), Positives = 32/32 (100%)
Frame = +3
Query: 507 LPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 602
+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR
Sbjct: 156 VPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR 187
Score = 35.1 bits (77), Expect = 0.036
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = +2
Query: 188 DQKEWVPVTKLGRLVREGKIDK 253
++ +WVPVTKLGRLV + KI K
Sbjct: 49 EETKWVPVTKLGRLVADNKITK 70
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/61 (31%), Positives = 39/61 (63%)
Frame = +1
Query: 331 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVY 510
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ ++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 511 Q 513
Q
Sbjct: 209 Q 209
>At2g26960.1 68415.m03234 myb family transcription factor (MYB81)
contains PFAM profile: myb DNA binding domain PF00249;
identical to cDNA putative transcription factor (MYB81)
mRNA, partial cds GI:3941513
Length = 427
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 330 IQGRAEEEINDLEFFDW*RKQVNALGLSIFPSRTRRPSLVTGTHS 196
+ GR + EI + F++ K++ LGL ++P R ++ THS
Sbjct: 104 LPGRTDNEIKN--FWNTRLKRLQRLGLPVYPDEVREHAMNAATHS 146
>At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR
alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
Length = 295
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 355 VQKQTRAGQRTRFKAFVAIGDNN-GHIGLGVKCSKEVATAIRGAIILAKLSVYQFEEVTG 531
V K RA Q+ RF F +G+NN GH ++ S EVA + R +IIL + QF EV G
Sbjct: 217 VSKVIRADQK-RF--FFDLGNNNRGHF---LRIS-EVAGSDRSSIILPLSGLKQFHEVIG 269
>At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR
alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
Length = 296
Score = 28.7 bits (61), Expect = 3.1
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +1
Query: 355 VQKQTRAGQRTRFKAFVAIGDNN-GHIGLGVKCSKEVATAIRGAIILAKLSVYQFEEVTG 531
V K RA Q+ RF F +G+NN GH ++ S EVA + R +IIL + QF EV G
Sbjct: 218 VSKVIRADQK-RF--FFDLGNNNRGHF---LRIS-EVAGSDRSSIILPLSGLKQFHEVIG 270
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 397 AFVAIGDNNGHIGLGVKCSKE 459
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -1
Query: 482 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMIFRTSSFR 324
A A+ H +P + P L P N R+R A CF +G + R + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 27.5 bits (58), Expect = 7.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 30 LSEPIVQQWRTLLQP 74
+S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -1
Query: 482 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 360
A A+ H +P + P L P N R+R A CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 377 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 285
P R FC+G+ +S + PR+KS +S+ L
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,710,053
Number of Sequences: 28952
Number of extensions: 252486
Number of successful extensions: 741
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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