Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10390
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        140   1e-33
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               30   2.3  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          29   3.0  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.9  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.9  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        29   5.2  
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              28   6.9  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   6.9  
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   6.9  
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     28   9.1  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      28   9.1  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  140 bits (338), Expect = 1e-33
 Identities = 63/98 (64%), Positives = 80/98 (81%)
 Frame = +2

Query: 221 GKKHYDAQSHQNHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 400
           GK     ++ + HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G 
Sbjct: 38  GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97

Query: 401 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTLK 514
           IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GT++
Sbjct: 98  IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIE 135



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 36/48 (75%), Positives = 40/48 (83%)
 Frame = +3

Query: 111 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 254
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIR 48



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 484 PYQNFKGYFEIINDVHILKPGDKVGA 561
           P +  +G  EIINDVH++K  +K+ A
Sbjct: 126 PTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +3

Query: 243 KAIKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSS 422
           KA  +TWT  + +RN   T ++ L   +P    L    N     +  Q +PV + +C+++
Sbjct: 93  KARSSTWTRTRNARNLIDTQQSQLEMNNPQH--LHRTYNFSMMNNVRQPIPVLVNNCRAN 150

Query: 423 FPPTTPASVQRKPLSSKLFP 482
                  S ++   SS L P
Sbjct: 151 DKLVESQSKRKSARSSNLIP 170


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = +3

Query: 132 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRAT 311
           +C    +  V S  +QQ  +S+R +       + ++   ++    +I+P+R C HTS   
Sbjct: 51  RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKV 110

Query: 312 LAS-CSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPA 443
           L++       S+R    C  T S++    V   + Q       PA
Sbjct: 111 LSTYVQLGVVSIRPARCCQHTSSKVLSAYVQQAYVQQGVVSIRPA 155



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +3

Query: 111 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKTTWTTIQPSRNC 290
           ++L    +C    +  V S  +QQ  +S+R +       + ++   ++    +I+P+R C
Sbjct: 204 KVLSRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCC 263

Query: 291 CHTSRATLAS-CSPAETSLRSVTNCWRTKSRL 383
            HTS   L++       S+R    C  T S++
Sbjct: 264 QHTSSKVLSTYVQSGVVSIRPARCCQHTSSKV 295



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 132 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRAT 311
           +C    +  V S  +QQ  +S+R +       + ++   ++    +I+P+R C HTS   
Sbjct: 320 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 379

Query: 312 L-ASCSPAETSLRSVTNCWRTKSRL 383
           L A       S+R    C  T S++
Sbjct: 380 LSAYVQQGVVSIRPARCCQHTSSKV 404



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = +3

Query: 150 ADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRATL-ASCS 326
           +  V S  +QQ  +S+R +       + ++   ++    +I+P+R C HTS   L A   
Sbjct: 301 SSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQ 360

Query: 327 PAETSLRSVTNCWRTKSRL 383
               S+R    C  T S++
Sbjct: 361 QGVVSIRPARCCQHTSSKV 379



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 132 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRAT 311
           +C    +  V S  +QQ  +S+R +       + ++   ++    +I+P+R C HTS   
Sbjct: 345 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 404

Query: 312 L-ASCSPAETSLRSVTNCWRTKSRL 383
           L A       S+R    C  T S++
Sbjct: 405 LSAYVQQGVVSIRPARCCEHTSSKV 429


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = +3

Query: 324 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ 500
           S + TS  ++   WR K    L  + L    SS P +TPAS+     ++ L PSL   Q
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQ 618


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 644 VPESYTCLTTRPYENGEMFNMLRRLASEAPTLSPGFKMCTSLMISK-YPLKFW*GWKELG 468
           +P+++       ++NG  F +  +  S  PT + G +  +S++IS+ Y  K       L 
Sbjct: 46  IPDNWKKGEPLKWKNGANFTLTDKWQSGKPTANEGEQRTSSVLISRDYMFK-----GSLN 100

Query: 467 RKRFSLDRGRCC 432
             R+ L RGR C
Sbjct: 101 SIRYDLHRGRIC 112



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 644 VPESYTCLTTRPYENGEMFNMLRRLASEAPTLSPGFKMCTSLMISK-YPLKFW*GWKELG 468
           +P+++       ++NG  F +  +  S  PT + G +  +S++IS+ Y  K       L 
Sbjct: 247 IPDNWKKGEPLKWKNGANFTLTDKWQSGKPTANEGEQRTSSVLISRDYMFK-----GSLN 301

Query: 467 RKRFSLDRGRCC 432
             R+ L RGR C
Sbjct: 302 SIRYDLHRGRIC 313


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 432 WAGMTTDNGAMAPGRAGAWTLFSNSL 355
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 125  VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 241
            VPKMFH     RG+ T+A  P + T +L+ R  G++  +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 478 KSLEERGFLWTEAGVVGGNDD*QWG 404
           K+LEERG L+  +GV GG +  ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184


>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 351 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 449
           V +C R        PVP PH ++S  PT P SV
Sbjct: 2   VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34


>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 1043

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/69 (24%), Positives = 28/69 (40%)
 Frame = -3

Query: 459  VFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 280
            +F G  P+++       G + P   G  + F       + R P   + P L     N+ S
Sbjct: 937  MFPGQSPLMYGPGMGGYGGVNPALLGQTSNFPGGPRPANMRGPPQVSSPQLHYGETNNAS 996

Query: 279  RAGLLSRWF 253
               +LS+WF
Sbjct: 997  NDNILSKWF 1005


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 369 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 259
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 218 HGKKHYDAQSHQNHLDNNPALEKLLP 295
           +G  H   +S Q+H+D+N  L KLLP
Sbjct: 19  NGVSHSANESPQHHIDDNNNLNKLLP 44


>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 363 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 485
           +RT+SR+ L    LP+   + PP+  TP  +   PLS    PS
Sbjct: 68  YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 198 RGSSIVLMGKNTMMRKAIKTTWTTIQPSRNCCHTSRATLASCSPAETSL 344
           RGS   ++G   M  K  +TT TT +P+      +RATL   + AE ++
Sbjct: 252 RGSVTSIVGVIDMKFKPYRTTLTTGKPNPVALGNARATLYCSATAEPAV 300


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 150  ADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKTT 260
            + +VGS + QQ+R  +  SS V  G+N  +R  +K+T
Sbjct: 1309 SSHVGSGRNQQVRKHVEVSSHVGSGRNQQVRHPLKST 1345


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,327,003
Number of Sequences: 59808
Number of extensions: 578264
Number of successful extensions: 1705
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1698
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)