Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10390
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 103 1e-22
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 103 1e-22
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 102 3e-22
At3g50610.1 68416.m05534 hypothetical protein 31 0.60
At5g13510.1 68418.m01560 ribosomal protein L10 family protein ri... 29 2.4
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.4
At2g41660.1 68415.m05147 expressed protein contains Pfam profile... 29 3.2
At5g13260.1 68418.m01523 expressed protein 28 5.6
At5g04470.1 68418.m00445 expressed protein 28 5.6
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont... 28 7.4
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 7.4
At3g56700.1 68416.m06307 male sterility protein, putative simila... 27 9.8
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 27 9.8
At1g58220.1 68414.m06612 myb family transcription factor contain... 27 9.8
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 103 bits (247), Expect = 1e-22
Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Frame = +2
Query: 221 GKKHYDAQSHQNHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 394
GK +S + H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 395 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTLKSST 523
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT++ T
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158
Score = 91.5 bits (217), Expect = 5e-19
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +1
Query: 499 KGYFEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 678
KG EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210
Query: 679 EDLRAKFQAGVANVAALS 732
+ L KF +G++ V +L+
Sbjct: 211 DQLVEKFASGISMVTSLA 228
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = +3
Query: 57 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 236
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 237 MRKAIK 254
M+++++
Sbjct: 61 MKRSVR 66
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 103 bits (247), Expect = 1e-22
Identities = 52/103 (50%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
Frame = +2
Query: 221 GKKHYDAQSHQNHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 394
GK +S + H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 395 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTLKSST 523
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT++ T
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 158
Score = 91.5 bits (217), Expect = 5e-19
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +1
Query: 499 KGYFEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 678
KG EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210
Query: 679 EDLRAKFQAGVANVAALS 732
+ L KF +G++ V +L+
Sbjct: 211 DQLVEKFASGISMVTSLA 228
Score = 75.4 bits (177), Expect = 4e-14
Identities = 35/66 (53%), Positives = 47/66 (71%)
Frame = +3
Query: 57 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 236
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 237 MRKAIK 254
M+++++
Sbjct: 61 MKRSVR 66
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 102 bits (244), Expect = 3e-22
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Frame = +2
Query: 221 GKKHYDAQSHQNHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 394
GK +S + H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 57 GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116
Query: 395 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTLKSST 523
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT++ T
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT 159
Score = 94.3 bits (224), Expect = 8e-20
Identities = 45/78 (57%), Positives = 58/78 (74%)
Frame = +1
Query: 499 KGYFEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 678
KG EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F PE+L++
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTE 211
Query: 679 EDLRAKFQAGVANVAALS 732
+DL KF AGV+ + ALS
Sbjct: 212 DDLVEKFAAGVSMITALS 229
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/61 (55%), Positives = 45/61 (73%)
Frame = +3
Query: 72 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 251
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 252 K 254
+
Sbjct: 67 R 67
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.5 bits (68), Expect = 0.60
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 212 RAHGKKHYDAQSHQNHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPA 388
+ + + H+ A + + +P + H KGNV + D KLL+ VQ
Sbjct: 17 KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76
Query: 389 RPGAIAPLSVVIPAHNTGLGPEK 457
+ G+ + P H+ G+G +K
Sbjct: 77 KTGSTDDFAPTSPGHSPGVGHKK 99
>At5g13510.1 68418.m01560 ribosomal protein L10 family protein
ribosomal protein L10- Nicotiana tabacum, EMBL:AB010879
Length = 220
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 168 QQMQQIRISLRGSSIVLMGKNTMMRKAIK-TTWTTIQP 278
+Q Q +R +L ++ +++ KNT++ KAI+ T W ++P
Sbjct: 76 KQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKWEALKP 113
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 266 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 364
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
PF04759: Protein of unknown function, DUF617
Length = 297
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 426 PPTTPA--SVQRKPLSSKLFPSLPKFQRVL*NHQRCTHL 536
P T+PA S R P SS L PS+P+ + L +RC+++
Sbjct: 22 PVTSPARSSHVRSPSSSALIPSIPEHELFLVPCRRCSYV 60
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 5.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 216 ARYWSHVARYGSAASVASPRYRH 148
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 399 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVL 509
P P Q PP+TP+S+ + KL SL K++ ++
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIV 87
>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1501
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 203 LQYRAHGKKHYDAQSHQNHLDNNPALEKLLPHIKGNVG 316
+Q ++G A + HLDNN +LEK +PH+ G
Sbjct: 617 MQRTSYGFGIAGAGNDSRHLDNN-SLEKAIPHLNSRDG 653
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 417 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 304
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 276 PSRNCCHTSRATLASCSPAETSLRSVTN 359
P R HT+R SC ETS +VT+
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTS 60
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.5 bits (58), Expect = 9.8
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Frame = -3
Query: 642 SRIIYLLNNKTI*EWRDVQHVEKVGFRSSNLVTGLQDVYIVDDFKVPFEILVGM--ERAW 469
+R+I + K I + ++ H + + N GL +V DF E +R
Sbjct: 140 NRLIDYMVQKGITPYANLYHYD-LPLALENKYKGLLGRQVVKDFADYAEFCYKTFGDRVK 198
Query: 468 KKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNT 319
F+ PR V A + DNG APGR F N S P + T
Sbjct: 199 NWMTFNEPRVV--AALGYDNGIFAPGRCS--KAFGNCTEGNSATEPYIVT 244
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 27.5 bits (58), Expect = 9.8
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Frame = -3
Query: 546 TGLQDVYIVDDFKVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLF 367
TGLQ + VG R K++ G P+L +G T GA A G + TL
Sbjct: 255 TGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQ 311
Query: 366 SN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 265
+LSR +T P ++ + GNS SRA L+
Sbjct: 312 GQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,922
Number of Sequences: 28952
Number of extensions: 402954
Number of successful extensions: 1261
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -