Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10389
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        24   1.2  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    23   2.8  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    23   3.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   6.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   6.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.6  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -3

Query: 354 PTNVHCGL*ASSKPRHKDQSRCPLRHTASTQPRP 253
           PT+V   L  S  P H      PL H  +  P P
Sbjct: 315 PTSVMTELYPSPVPGHSTSPNLPLTHNIAHNPYP 348


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 296 DWSLWRGLEEAYKPQWTFV 352
           DW  W+ LE  Y P+ T+V
Sbjct: 98  DW--WKQLEAKYDPEHTYV 114


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 613 E*IYQYPMDTNQYQNRPMQFLDTLM*K 533
           E +YQ   D  Q  +RP+ F DTL  K
Sbjct: 20  EKVYQELRDIFQDSDRPITFNDTLQMK 46


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 620  YFGMNLSISDGH*PVSEQADAI-LRYPNVKANVDII 516
            Y    +SI+     VS+   ++ LRYPN KAN + +
Sbjct: 1421 YVQQRMSIAPNR--VSQARPSVQLRYPNGKANENFV 1454


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 620  YFGMNLSISDGH*PVSEQADAI-LRYPNVKANVDII 516
            Y    +SI+     VS+   ++ LRYPN KAN + +
Sbjct: 1421 YVQQRMSIAPNR--VSQARPSVQLRYPNGKANENFV 1454


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 356 SPQTSTAAYRPPPS 315
           SPQ  T   RPPP+
Sbjct: 107 SPQIQTQVARPPPA 120


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 356 SPQTSTAAYRPPPS 315
           SPQ  T   RPPP+
Sbjct: 107 SPQIQTQVARPPPA 120


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 IRSTSNVSCSLPLQR 186
           + STSN+   +PL+R
Sbjct: 171 VESTSNLQADMPLER 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,985
Number of Sequences: 336
Number of extensions: 4405
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)