Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10389
(797 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical ... 46 4e-05
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 39 0.004
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 39 0.004
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 39 0.004
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 39 0.004
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 29 3.9
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 29 3.9
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 28 8.9
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 28 8.9
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 28 8.9
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 28 8.9
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 28 8.9
>AC103567-9|AAL35735.1| 204|Caenorhabditis elegans Hypothetical
protein Y51F10.8 protein.
Length = 204
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = -3
Query: 168 AGHIARGTDNRWGQNVLDWRPRTERRSVDRSPTRY 64
AGH+AR TD RW + DW PR E+R V R P R+
Sbjct: 126 AGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRW 160
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 168 AGHIARGTDNRWGQNVLDWRPRTERRSVDRSPTRY 64
AGH+AR D RW + +WRP +R V R P R+
Sbjct: 815 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRW 849
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 168 AGHIARGTDNRWGQNVLDWRPRTERRSVDRSPTRY 64
AGH+AR D RW + +WRP +R V R P R+
Sbjct: 990 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRW 1024
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 168 AGHIARGTDNRWGQNVLDWRPRTERRSVDRSPTRY 64
AGH+AR D RW + +WRP +R V R P R+
Sbjct: 729 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRW 763
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 168 AGHIARGTDNRWGQNVLDWRPRTERRSVDRSPTRY 64
AGH+AR D RW + +WRP +R V R P R+
Sbjct: 341 AGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRW 375
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 51 IGSCSILWETYPRYVFRYAVANQERSGPSGYPFHEQ 158
I SC++L + ++ V N ERS P +PF E+
Sbjct: 46 IRSCNVLIKLLTCILYCIRVVNDERSYPDDFPFSEE 81
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 51 IGSCSILWETYPRYVFRYAVANQERSGPSGYPFHEQ 158
I SC++L + ++ V N ERS P +PF E+
Sbjct: 67 IRSCNVLIKLLTCILYCIRVVNDERSYPDDFPFSEE 102
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 51 IGSCSILWETYPRYVFRYAVANQERSGPSGYPFHEQ 158
I SC++L + ++ V N ERS P +PF E+
Sbjct: 67 IRSCNVLIKLLTCILYCIRVVNDERSYPDDFPFSEE 102
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 51 IGSCSILWETYPRYVFRYAVANQERSGPSGYPFHEQ 158
I SC++L + ++ V N ERS P +PF E+
Sbjct: 67 IRSCNVLIKLLTCILYCIRVVNDERSYPDDFPFSEE 102
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 51 IGSCSILWETYPRYVFRYAVANQERSGPSGYPFHEQ 158
I SC++L + ++ V N ERS P +PF E+
Sbjct: 67 IRSCNVLIKLLTCILYCIRVVNDERSYPDDFPFSEE 102
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 347 TSTAAYRPPPSLATKTNPDVHCGTRPL 267
+ T+ PPP ++++T+PD +C + PL
Sbjct: 491 SGTSLVTPPPPISSRTSPD-NCNSSPL 516
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 347 TSTAAYRPPPSLATKTNPDVHCGTRPL 267
+ T+ PPP ++++T+PD +C + PL
Sbjct: 566 SGTSLVTPPPPISSRTSPD-NCNSSPL 591
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 347 TSTAAYRPPPSLATKTNPDVHCGTRPL 267
+ T+ PPP ++++T+PD +C + PL
Sbjct: 500 SGTSLVTPPPPISSRTSPD-NCNSSPL 525
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 347 TSTAAYRPPPSLATKTNPDVHCGTRPL 267
+ T+ PPP ++++T+PD +C + PL
Sbjct: 644 SGTSLVTPPPPISSRTSPD-NCNSSPL 669
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 347 TSTAAYRPPPSLATKTNPDVHCGTRPL 267
+ T+ PPP ++++T+PD +C + PL
Sbjct: 491 SGTSLVTPPPPISSRTSPD-NCNSSPL 516
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,621,249
Number of Sequences: 27780
Number of extensions: 413191
Number of successful extensions: 1235
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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