Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10389
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   0.81 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.9  

>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 299 NPDVHCGTRP 270
           +P VHCGTRP
Sbjct: 17  SPSVHCGTRP 26


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 760 LERLYQLYHSV*VSSRWSNEDVSQNLSPDRKRDPLRRSNEKLS 632
           L RL +L   V   S+W    + QNL   R R   R S++ +S
Sbjct: 216 LVRLLRLSRLVRYVSQWEEVYILQNLQKKRTRAEGRLSSDNMS 258


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 311 RGLEEAYKPQWTFVG 355
           RG+EEA  PQ+T +G
Sbjct: 199 RGVEEAELPQFTIIG 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,589
Number of Sequences: 438
Number of extensions: 5769
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)