Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10389
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60930.1 68416.m06816 expressed protein                             28   8.3  
At1g70880.1 68414.m08177 Bet v I allergen family protein similar...    28   8.3  

>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 542 NVKANVDIIRIKLS*PSYA*IFETGETNHPIDTTRTTVSSQKLRKIKMVRNK 387
           N+KAN +I+R+K    S A      E    + TTR  VS   + K+K   +K
Sbjct: 636 NLKANSEIVRLKRM-LSEARGLRDSEVARAVQTTRREVSETFIAKMKNAEHK 686


>At1g70880.1 68414.m08177 Bet v I allergen family protein similar to
           Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci
           124, 136-139 (1999)] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 159

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 637 VSHWIFSVDRVSDPVIDSATRLRLTTESS 723
           V+HW F  +++++ V    T L+L TE S
Sbjct: 120 VAHWHFEYEKINEEVAHPETLLQLATEVS 148


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,668,311
Number of Sequences: 28952
Number of extensions: 388227
Number of successful extensions: 1126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)