Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10388
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...   123   7e-29
Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical pr...    29   2.9  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    29   2.9  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score =  123 bits (297), Expect = 7e-29
 Identities = 53/66 (80%), Positives = 60/66 (90%)
 Frame = +3

Query: 246 LEKMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSS 425
           L  MII+PE+VG ++GIYNGK FNQ EIKPEMIG YLGEF+++YKPVKHGRPGIGATHSS
Sbjct: 86  LRDMIILPELVGGVIGIYNGKVFNQTEIKPEMIGFYLGEFAISYKPVKHGRPGIGATHSS 145

Query: 426 RFIPLK 443
           RFIPLK
Sbjct: 146 RFIPLK 151



 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 45/76 (59%), Positives = 52/76 (68%)
 Frame = +1

Query: 25  LKKKRIFRKFTYRGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRAKK 204
           LKKKR FRKF YRGVDLDQLLDM  EQ  +L+          GLKRK +AL+ K+++AKK
Sbjct: 12  LKKKRTFRKFMYRGVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQKAKK 71

Query: 205 EAPPNEKPEIVKTHLR 252
            A   EKP  VKTHLR
Sbjct: 72  AAGVLEKPATVKTHLR 87


>Z68161-12|CAA92301.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 207 GSSE*EARDREDSLEKMIIVPEMVGSIVGIYNGK 308
           GS + E RD     +K   V + +GSI G++NGK
Sbjct: 411 GSHQQEVRDLLAQYKKFSDVVKKIGSIKGLFNGK 444


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 14  STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 115
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


>Z54271-9|CAA91040.1|  496|Caenorhabditis elegans Hypothetical
           protein F21D5.7 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 207 GSSE*EARDREDSLEKMIIVPEMVGSIVGIYNGK 308
           GS + E RD     +K   V + +GSI G++NGK
Sbjct: 411 GSHQQEVRDLLAQYKKFSDVVKKIGSIKGLFNGK 444


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 14  STKPSRKSVFSGSSLTGELISISSLICPMSNSWN 115
           +T  S   VFSG++L   L + +SL   +SN WN
Sbjct: 4   TTATSGAIVFSGATLLVSLFAAASLYSQVSNIWN 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,992,443
Number of Sequences: 27780
Number of extensions: 206469
Number of successful extensions: 478
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)