Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10386
(420 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D) 138 2e-33
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden... 132 9e-32
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A) 129 9e-31
At2g44870.1 68415.m05586 expressed protein 30 0.55
At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putativ... 27 5.2
At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia l... 27 5.2
At3g56410.2 68416.m06274 expressed protein 27 6.8
At3g56410.1 68416.m06273 expressed protein 27 6.8
At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transfera... 26 9.0
>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
Length = 84
Score = 138 bits (333), Expect = 2e-33
Identities = 59/77 (76%), Positives = 65/77 (84%)
Frame = +2
Query: 26 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 205
IDLLHP P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC C T+LC
Sbjct: 7 IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66
Query: 206 QPTGGRARLTEGCSFRK 256
QPTGG+ARL EGCSFRK
Sbjct: 67 QPTGGKARLQEGCSFRK 83
>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
identical to cDNA ribosomal protein S27 (ARS27A)
GI:4193381
Length = 86
Score = 132 bits (319), Expect = 9e-32
Identities = 57/77 (74%), Positives = 65/77 (84%)
Frame = +2
Query: 26 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 205
IDLL+P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VVVC C TILC
Sbjct: 7 IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66
Query: 206 QPTGGRARLTEGCSFRK 256
QPTGG+A+LTEGCSFR+
Sbjct: 67 QPTGGKAKLTEGCSFRR 83
>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
Length = 84
Score = 129 bits (311), Expect = 9e-31
Identities = 55/77 (71%), Positives = 64/77 (83%)
Frame = +2
Query: 26 IDLLHPSPASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 205
IDLL+P E+RKHKLKRLV PNS+FMDVKC GC+ ITTVFSH+Q VV+C C T+LC
Sbjct: 7 IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66
Query: 206 QPTGGRARLTEGCSFRK 256
PTGG+A+LTEGCSFRK
Sbjct: 67 TPTGGKAKLTEGCSFRK 83
>At2g44870.1 68415.m05586 expressed protein
Length = 248
Score = 30.3 bits (65), Expect = 0.55
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 98 NSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTG 217
N++ + +CP C + + +++ C GC I+ QP G
Sbjct: 175 NNFVIKGECPACKR--QFIGYKNQIIRCEGCGNIVWQPQG 212
>At4g21100.1 68417.m03051 UV-damaged DNA-binding protein, putative
similar to UV-damaged DNA binding protein (GI:12082087)
[Oryza sativa] and damage-specific DNA binding protein
1, Homo sapiens, PIR2:I38908; contains Pfam PF03178 :
CPSF A subunit region
Length = 1088
Score = 27.1 bits (57), Expect = 5.2
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +2
Query: 11 TMPLAIDLLHPSPASERRKHKLKRLVPHPN-----SYFMDVKCPGCYKITTVFSHAQRVV 175
T AI L P++E + RL+ + SY +D GC ++ F+ + V
Sbjct: 724 TRTFAISCLRNEPSAEESESHFVRLLDAQSFEFLSSYPLDAFECGCSILSCSFTDDKNVY 783
Query: 176 VCAGCSTIL---CQPTGGR 223
C G + +L +PT GR
Sbjct: 784 YCVGTAYVLPEENEPTKGR 802
>At4g02120.1 68417.m00283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 556
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 145 CNLVTARALNIHEIRVRMWH*PLKL 71
C++ A LNIH++ +WH PL L
Sbjct: 234 CHVAAANILNIHDV-PNIWHVPLLL 257
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 80 RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 202
R VP +S V+CP C+K+ A C GC +IL
Sbjct: 55 RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 94
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 80 RLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTIL 202
R VP +S V+CP C+K+ A C GC +IL
Sbjct: 8 RTVPGLSSQSRIVRCPKCHKLLQEPLDATS-YKCGGCDSIL 47
>At2g36770.1 68415.m04510 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 74 LKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILC 205
++ + P P+ D+ P KI FS + V GC +LC
Sbjct: 117 MEEMKPRPSCIISDLLLPYTSKIARKFSIPKIVFHGTGCFNLLC 160
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,331,454
Number of Sequences: 28952
Number of extensions: 148337
Number of successful extensions: 366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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