Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10385
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23703| Best HMM Match : TTL (HMM E-Value=0)                         30   2.6  
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_51790| Best HMM Match : TTL (HMM E-Value=0)                         30   2.6  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   29   5.9  
SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89)          29   5.9  
SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_23703| Best HMM Match : TTL (HMM E-Value=0)
          Length = 657

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 468 LSHFT*NSVETRKEILRRHLQTKRG*CDVASFTYFPVSMILLFSFVAFVLPLS 626
           L+HF   S  TRK+ L R+L+  RG      F + P+S  L   +  FV   S
Sbjct: 62  LNHFPKTSAITRKDCLARNLRRMRGVYGNYLFNFAPLSFNLPNDYRKFVAEYS 114


>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 10  KLRDHVHRLKEQVLEHANGGCHI 78
           +LR  V  LKEQV+ H +GGC +
Sbjct: 180 ELRRLVCELKEQVMNHVSGGCQV 202


>SB_51790| Best HMM Match : TTL (HMM E-Value=0)
          Length = 536

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 468 LSHFT*NSVETRKEILRRHLQTKRG*CDVASFTYFPVSMILLFSFVAFVLPLS 626
           L+HF   S  TRK+ L R+L+  RG      F + P+S  L   +  FV   S
Sbjct: 62  LNHFPKTSAITRKDCLARNLRRMRGVYGNYLFNFAPLSFNLPNDYRKFVAEYS 114


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 807  PLVTSLDAPVPVLRHLSPLLILNFGPV 727
            PL +  D+PVP  R  SP L ++F P+
Sbjct: 2321 PLTSPRDSPVPFSRAKSPQLSVDFAPI 2347


>SB_22269| Best HMM Match : Metallothionein (HMM E-Value=0.89)
          Length = 251

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -1

Query: 355 RHNYPHTTIITIVSAIDGSLHNTTGKPNLSNLTRIHSIL*RSDFNTLH 212
           RHN  H T          SLHNTT   +L N TR +S+   +  N+LH
Sbjct: 132 RHNSLHNT------TRHNSLHNTTRHNSLPNTTRHNSLHNTTRHNSLH 173


>SB_41301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -1

Query: 355 RHNYPHTTIITIVSAIDGSLHNTTGKPNLSNLTRIHSIL*RSDFNTLH 212
           RHN  H T          SLHNTT   +L N TR +S+   +  N+LH
Sbjct: 109 RHNSLHNT------TRHNSLHNTTRHNSLHNTTRHNSLPNTTRHNSLH 150


>SB_37759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 367 LQYHRHNYPHTTIITIVSAIDGSLHNTT 284
           + Y RH+YPH + + I + +  +L  TT
Sbjct: 80  INYPRHHYPHISTLVITTLVTTTLVTTT 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,583,608
Number of Sequences: 59808
Number of extensions: 428628
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)