Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10385
         (811 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   4.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   4.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.7  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 100 DAIRSATRCGSHHSHALGPAPLACARGPLVS 8
           D +        H SH   PAP   ++ PL+S
Sbjct: 31  DGMNQCQAVNGHCSHLCLPAPRINSKSPLLS 61


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 100 DAIRSATRCGSHHSHALGPAPLACARGPLVS 8
           D +        H SH   PAP   ++ PL+S
Sbjct: 31  DGMNQCQAVNGHCSHLCLPAPRINSKSPLLS 61


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 246 LWILVKFERLGLPVVLCREPSIAD 317
           LWI      +G  ++LC  P++ D
Sbjct: 490 LWIFTIASIVGTFIILCEAPALRD 513


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 564 TYFPVSMILLFSFVAF 611
           TY P ++I++ S++AF
Sbjct: 220 TYIPSALIVVMSWIAF 235


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +2

Query: 665 IIKSHFGCNLYIRQRTR*QASTGPKFNMSKGDRWRKTGTGASSEV 799
           ++  H G N   R         GP F     D  +  GTG  SE+
Sbjct: 339 LLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQLPGTGRQSEL 383


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +2

Query: 665 IIKSHFGCNLYIRQRTR*QASTGPKFNMSKGDRWRKTGTGASSEV 799
           ++  H G N   R         GP F     D  +  GTG  SE+
Sbjct: 339 LLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQLPGTGRQSEL 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,311
Number of Sequences: 438
Number of extensions: 3915
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)