Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31056
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 31 0.11
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 30 0.26
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 27 3.2
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 26 4.2
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 25 7.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 9.7
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 25 9.7
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi... 25 9.7
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.7
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 25 9.7
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 31.5 bits (68), Expect = 0.11
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 454 RLLIDHQIHIRINLNLV-IPSITESANPSSHSAAAITAPGGLVRPGGTRPNRSKPQKASF 630
R+LI Q HIR+ +V +PS + H A+++P G RPG + R + Q+
Sbjct: 126 RVLI-FQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGE 184
Query: 631 G 633
G
Sbjct: 185 G 185
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 30.3 bits (65), Expect = 0.26
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 454 RLLIDHQIHIRINLNLV-IPSITESANPSSHSAAAITAPGGLVRPGGTRPNRSKPQK 621
R+LI Q HIR+ +V +PS + H A+++P G RPG + R + Q+
Sbjct: 126 RVLI-FQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQ 181
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = -3
Query: 347 WHEIYPVRYVVTVGRGQRHYAALSCMLWSCRTAHSSSRLPHSP 219
W ++ +R++ T AA++ ++W+ AH + + H P
Sbjct: 202 WFPVHQIRHLFTFKAIVAPPAAIAFLIWALVKAHGAGPVIHEP 244
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -3
Query: 347 WHEIYPVRYVVTVGRGQRHYAALSCMLWSCRTAHSSSRLPHS 222
W +Y +R++ T AA++ ++W+ AH + H+
Sbjct: 200 WFPVYQIRHLFTAKSFLAPPAAIAFLIWALVKAHGAGDAIHA 241
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 25 CWEPYVFKCI*TPYIFSFIHFIIFNVLNF 111
C E Y KCI PY F F + + NF
Sbjct: 327 CKEAYCTKCIINPYEFGFETGNYYTLSNF 355
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +1
Query: 64 YIFSFIHFIIFNVLNFIWKMQYLVQLVVAFLLTTQASSDNSTLSEDTCITEHGLWGSLLE 243
Y S + FII +W M ++ +V + + Q S N E + +H + L E
Sbjct: 455 YFVSCLLFIISAYFLTLWLMSLVIAVVTSSFIDLQHSGKNQ--KEQKSVDKHLIRNKLCE 512
Query: 244 EW 249
++
Sbjct: 513 KY 514
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 445 DLGRLLIDHQIHIRINLNLVIPSITESANPSSHS 546
++GRL +DH + R +LN+ IT++ N ++ S
Sbjct: 152 EIGRLTLDHVLRERQSLNI---HITDAINKAAES 182
>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 105
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 299 APCPRLLRI*PDRSHATTTTASPLVPHYSASAS 397
+P L+R P+ HA + + P P YS+ AS
Sbjct: 69 SPNDPLVRYTPNPEHAVSPHSGPAPPSYSSLAS 101
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 287 AALSCMLWSCRTAHSSSRLPHSP 219
AA++CML C ++ +PH P
Sbjct: 198 AAITCMLNLCSVVENNDIIPHIP 220
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 570 RISSTGWDETKPEQTTESKFRK 635
R+ G D+T PE+ TE + RK
Sbjct: 489 RLKKLGIDKTNPEELTEEEQRK 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,098
Number of Sequences: 5004
Number of extensions: 56527
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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