Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31056
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0767 - 27572322-27572591                                         31   1.1  
08_02_1020 - 23661507-23661517,23663328-23663464,23663704-23663915     29   3.3  
08_01_0855 + 8407411-8407628,8408231-8408267                           29   3.3  
07_01_1027 - 8873582-8876275                                           29   3.3  
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991     29   3.3  
04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    29   4.3  
01_07_0133 + 41335752-41336021,41336123-41336290                       29   4.3  
01_05_0175 - 18936752-18937621,18938855-18941641                       29   4.3  
07_03_1098 + 23942933-23943025,23943051-23943749                       28   5.7  
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757...    28   5.7  
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508...    28   5.7  
01_01_0265 + 2153326-2154279                                           28   5.7  

>03_05_0767 - 27572322-27572591
          Length = 89

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 519 RISQSQFTLRSSHNGSWRISSTGWDETKPEQTTESKFRK 635
           R  QS++   +  NG W +   GW  T+    TE++ ++
Sbjct: 6   RQRQSEWWWSTGQNGEWFVGDRGWQRTQQHMPTETESKR 44


>08_02_1020 - 23661507-23661517,23663328-23663464,23663704-23663915
          Length = 119

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 544 SAAAITAPGGLVRPGGTRPNRSKPQKA 624
           + AA  APGGLVR    RP RS  ++A
Sbjct: 73  AGAACVAPGGLVRAMARRPARSMEREA 99


>08_01_0855 + 8407411-8407628,8408231-8408267
          Length = 84

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 368 AGRRWWWWHEIYPVRYVVTVGRGQ 297
           + R WWWW    P    + VGRG+
Sbjct: 21  SNRWWWWWWWSSPAAAGIGVGRGR 44


>07_01_1027 - 8873582-8876275
          Length = 897

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 174 TRLRRQEECHHELD*ILHLPNKV*HIKNYEMNKRKYIRR 58
           T     +E  +++D + H P +   IKNY++NKR  + R
Sbjct: 122 TEYDSSDEAIYDIDLLCHDPGRRIAIKNYDVNKRNSVIR 160


>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
          Length = 276

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 180 QQHAFRRHVHHGTRTMGQPARRVGRSATPQHTRQGR 287
           Q HA  R  HHG        +    SA+PQH   GR
Sbjct: 159 QMHAASRRHHHGRHHQQVAPKARSASASPQHNIYGR 194


>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 310 TVTTYLTG*ISCHHHHRLPACTPLLSICLTPRTTMSG--RPVRHRHQ 444
           T+ +YL G  S  H H LPA  P  +    P T   G   PV   H+
Sbjct: 26  TIASYLLGLWSRAHRHSLPAPAPAPAPAPAPETHRPGIRHPVPRHHR 72


>01_07_0133 + 41335752-41336021,41336123-41336290
          Length = 145

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 213 GTRTMGQPARRVGRSATPQHTRQGRIMALPPAHGY 317
           G   +  PAR VG SATP   R  R+ A P A G+
Sbjct: 5   GLAALSSPAR-VGASATPCSGRPVRVSATPAAGGW 38


>01_05_0175 - 18936752-18937621,18938855-18941641
          Length = 1218

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 346 HHHHRLPACTPLLSICLTPRTTMSGRPVRHRHQDLGRLL 462
           H   R    TP  + CL P    S R +RH H+   R L
Sbjct: 433 HAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFL 471


>07_03_1098 + 23942933-23943025,23943051-23943749
          Length = 263

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 335 RSHATTTTASPLVPHYSASASP 400
           RS  TTTT +P  PH +A+A+P
Sbjct: 181 RSTTTTTTKNPGTPHDAAAAAP 202


>07_03_0551 +
           19374405-19374541,19375201-19375435,19375539-19375700,
           19375778-19375819,19375941-19376012,19376291-19376370,
           19376962-19377059,19377691-19377738,19377983-19378083,
           19378331-19378426,19378599-19378689,19379510-19379706,
           19380918-19381004,19381208-19381488,19381653-19381743
          Length = 605

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 337 ISCHHHHRLPACTPLLSICLTPRTTMSGR 423
           + C HH   P+ + L  +C  P+ +  GR
Sbjct: 440 LGCRHHRARPSQSQLCDVCCLPQLSRGGR 468


>04_01_0383 +
           5085697-5085724,5085816-5085927,5087249-5087285,
           5087512-5087581,5087704-5087808,5088022-5088172,
           5088257-5088339,5089152-5089372,5089465-5089501,
           5089668-5089753
          Length = 309

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
 Frame = +2

Query: 224 YGAACSKSGPFCNSTTYKTR-----PHNGVAPCPRLLRI*PDRSHATTTTASPL 370
           + AAC   G F NS  Y          +G  PC R LR   + SH     AS L
Sbjct: 134 HSAACYAHGKFANSMPYPITLSAVISLSGWLPCSRTLRSKTESSHMAARRASSL 187


>01_01_0265 + 2153326-2154279
          Length = 317

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 406 TTMSGRPVRHRHQDLGRLLIDHQIHIRINLNLVIPSITESANPSSHSAAAITAPGG 573
           +T   +      ++L  +  D  IH+     L +PS T +  PSS     +  P G
Sbjct: 21  STTDSKQEEEEEEELAAMEEDELIHVVQAAELRLPSSTTATRPSSRYKGVVPQPNG 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,265,243
Number of Sequences: 37544
Number of extensions: 436498
Number of successful extensions: 1655
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)