Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31056
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 34 0.096
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 33 0.22
At4g33310.1 68417.m04738 expressed protein 30 1.2
At1g17440.2 68414.m02133 transcription initiation factor IID (TF... 30 1.2
At1g17440.1 68414.m02132 transcription initiation factor IID (TF... 30 1.2
At1g80380.2 68414.m09410 phosphoribulokinase/uridine kinase-rela... 30 1.6
At1g80380.1 68414.m09409 phosphoribulokinase/uridine kinase-rela... 30 1.6
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 29 2.7
At1g23230.1 68414.m02906 expressed protein 29 3.6
At3g53590.1 68416.m05919 leucine-rich repeat transmembrane prote... 28 4.8
At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger) fa... 28 6.3
At2g29670.1 68415.m03606 expressed protein 27 8.4
At1g49030.1 68414.m05497 expressed protein similar to PGPS/D12 [... 27 8.4
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 33.9 bits (74), Expect = 0.096
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 454 RLLIDHQIHIRINLNLV-IPSITESANPSSHSAAAITAPGGLVRPGGT--RPNRSKPQKA 624
R+LI Q HIR+ LV IPS + H A+T+P G RPG R +S +KA
Sbjct: 128 RVLI-RQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKA 186
Query: 625 SFG 633
S G
Sbjct: 187 SGG 189
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 32.7 bits (71), Expect = 0.22
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +1
Query: 454 RLLIDHQIHIRINLNLV-IPSITESANPSSHSAAAITAPGGLVRPGGT--RPNRSKPQKA 624
R+LI Q HIR+ LV IPS H ++T+P G RPG R R+ +KA
Sbjct: 128 RVLI-RQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKA 186
Query: 625 SFGN 636
S G+
Sbjct: 187 SGGD 190
>At4g33310.1 68417.m04738 expressed protein
Length = 86
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = -3
Query: 431 RTGLPLIVVRGVRQMLSSGVQAGRRWWWW 345
R GL G + GV+ RWWWW
Sbjct: 58 RNGLRRAPAVGFEDSVEEGVEKEWRWWWW 86
>At1g17440.2 68414.m02133 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 499 LVIPSITESANPSSHSAAAITAPGGLVRPGGTRPNRSKPQKASFGNPI 642
L+ I+ S N ++ A +T G+V ++PN S P S PI
Sbjct: 41 LMTAPISNSVNSAASPAMTVTTTEGIVIQNNSQPNISSPNPTSSNPPI 88
>At1g17440.1 68414.m02132 transcription initiation factor IID
(TFIID) subunit A family protein similar to SP|Q16514
Transcription initiation factor TFIID 20/15 kDa subunits
(TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
profile PF03847: Transcription initiation factor TFIID
subunit A
Length = 683
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 499 LVIPSITESANPSSHSAAAITAPGGLVRPGGTRPNRSKPQKASFGNPI 642
L+ I+ S N ++ A +T G+V ++PN S P S PI
Sbjct: 41 LMTAPISNSVNSAASPAMTVTTTEGIVIQNNSQPNISSPNPTSSNPPI 88
>At1g80380.2 68414.m09410 phosphoribulokinase/uridine kinase-related
Length = 456
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 221 DYGAACSKSGPFCNSTTYKTRPHNGVAPCPRLLRI*PDRSHATTTTASPLVPHYSASA 394
DY C S P CNS +K R + +P + P S+ ++ SP+ H S +A
Sbjct: 26 DYPIPCHSSNPICNSFNFKRRSFSPSSPKFNDHVVNPSSSY-LSSKLSPIRTHSSFAA 82
>At1g80380.1 68414.m09409 phosphoribulokinase/uridine kinase-related
Length = 362
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 221 DYGAACSKSGPFCNSTTYKTRPHNGVAPCPRLLRI*PDRSHATTTTASPLVPHYSASA 394
DY C S P CNS +K R + +P + P S+ ++ SP+ H S +A
Sbjct: 26 DYPIPCHSSNPICNSFNFKRRSFSPSSPKFNDHVVNPSSSY-LSSKLSPIRTHSSFAA 82
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 301 PLPTVTTYLTG*ISCHHHHRLPACTPLLSICLT 399
P PT+T +T + HHHHR P P + +T
Sbjct: 160 PPPTITPPVTTTTTGHHHHRPPPPPPATTTPIT 192
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 463 IDHQIHIRINL-NLVIPSITESANPSSHSAAAITAPGGLVR-PGGTRPNRSKPQKAS 627
+D+ + +NL N VIP ++ S+N SS S + R P G P S+P A+
Sbjct: 1211 LDYFASLLLNLVNNVIPPLSSSSNCSSRSGSMADILNSSARPPHGKTPGTSQPGPAN 1267
>At3g53590.1 68416.m05919 leucine-rich repeat transmembrane protein
kinase, putative CLV1 receptor kinase, Arabidopsis
thaliana, EMBL:ATU96879
Length = 783
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 409 TMSGRPVRHRHQDLGRLLIDHQIHIRI---NLNLVIPSITESANPSSHSAAAITAPGGLV 579
T + PV HR +L+D Q+H ++ L+ + P+ E +H + + G +
Sbjct: 556 TEANPPVIHRDIKTSNILLDCQLHAKVADFGLSRLAPAFGEGDGEPAHVSTVVRGTPGYL 615
Query: 580 RP 585
P
Sbjct: 616 DP 617
>At5g17600.1 68418.m02064 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 362
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 513 HHRISQSQFTLRSSHNGSWRISSTGWDETKPEQTTESKFRKPDLY 647
HH+ S S+ TL +HNG SST T + ES + +Y
Sbjct: 85 HHQTSSSE-TLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVY 128
>At2g29670.1 68415.m03606 expressed protein
Length = 536
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 145 VAFLLTTQASSDNSTLSEDTCITEHGLWGSLLEEWAVLQLHNIQD 279
V+ L ++ S+ S +D EH LW S++EE +Q NI D
Sbjct: 351 VSQLSSSNFGSEPSVSGQD----EHRLWNSMVEEAERMQYSNIDD 391
>At1g49030.1 68414.m05497 expressed protein similar to PGPS/D12
[Petunia x hybrida] GI:4105794; contains Pfam profile
PF04749: Protein of unknown function, DUF614
Length = 224
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Frame = -1
Query: 283 PCLVCCGVAERPTLRAGCPIVRVP*----CTCLLKACCCHYSPASSRGMPPRVG 134
PC+ C + + G P P C C A C Y +RG+ P +G
Sbjct: 144 PCVYTCTFRTKLRSKYGLPDAPAPDWITHCFCEYCALCQEYRELKNRGLDPSIG 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,989
Number of Sequences: 28952
Number of extensions: 314879
Number of successful extensions: 962
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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