Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31055
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    28   1.6  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   6.4  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   8.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    25   8.4  

>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = +3

Query: 537 YFKVYAFHIPWKNFTYSVAG*NIY----FKLLNLI 629
           +F  Y   IPW NF +SV G  ++    F +L L+
Sbjct: 305 FFTYYGTIIPWNNFNWSVEGLPVWRLIVFSILTLV 339


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 524 FDANLFQSVCISYPVEKLYLF 586
           F+ N F+ +CI+Y  EKL  F
Sbjct: 452 FEKNSFEQLCINYTNEKLQQF 472


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 334 TRIRERSWTELDRPSFSFSNMQSRM 408
           TRI ER  T ++  SFS S  +SRM
Sbjct: 600 TRIMERLQTRVEYQSFSKSGRKSRM 624


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 392 LLNEKDGLSNSVQLLSLIRVLNWNLT 315
           LLN K  L+ S+QL  L  +  WN T
Sbjct: 470 LLNPKTRLAGSLQLFCLSIIKRWNQT 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,096,591
Number of Sequences: 5004
Number of extensions: 65060
Number of successful extensions: 154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)