Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31055
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0181 + 20985960-20987825,20987904-20989169                       28   6.6  
06_01_1086 + 8890806-8890865,8890970-8891055,8891366-8891440,889...    28   6.6  

>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 47  KLNVLITDKQ-SIGTMSAVPLPTFDFCK 127
           K NV  T  Q S+ ++ A P P FDFCK
Sbjct: 386 KKNVTDTASQKSVNSVIAYPYPDFDFCK 413


>06_01_1086 +
           8890806-8890865,8890970-8891055,8891366-8891440,
           8892780-8892921,8893304-8893490,8893944-8894425,
           8894595-8894975,8895056-8895100,8896486-8896639,
           8897750-8897895,8898016-8898099
          Length = 613

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 712 GVENPQIFPIKSGIWLEDWPCPYLGSHY 629
           G   P ++P K G+W++  P P+  +H+
Sbjct: 529 GSTGPIVWPSKCGVWIKVGPSPWRRAHH 556


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,879,369
Number of Sequences: 37544
Number of extensions: 376076
Number of successful extensions: 694
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)