Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31055
         (732 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003383-1|AAH03383.1|  396|Homo sapiens transcription factor B2...    30   7.4  
AL356583-5|CAI16399.1|  396|Homo sapiens transcription factor B2...    30   7.4  
AK026835-1|BAB15566.1|  396|Homo sapiens protein ( Homo sapiens ...    30   7.4  
AK026314-1|BAB15441.1|  230|Homo sapiens protein ( Homo sapiens ...    30   7.4  
AF529366-1|AAQ09600.1|  396|Homo sapiens NS5ATP5 protein.              30   7.4  
BC117140-1|AAI17141.1|  761|Homo sapiens protein-kinase, interfe...    30   9.8  
BC117138-1|AAI17139.1|  761|Homo sapiens protein-kinase, interfe...    30   9.8  
BC110304-1|AAI10305.1|  761|Homo sapiens protein-kinase, interfe...    30   9.8  
BC021992-1|AAH21992.1|  150|Homo sapiens PRKRIR protein protein.       30   9.8  
AF081567-1|AAG01570.1|  761|Homo sapiens death associated protei...    30   9.8  

>BC003383-1|AAH03383.1|  396|Homo sapiens transcription factor B2,
           mitochondrial protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 306 IYKRQIPIEDPN*GKKLDGVRQAVFLIQQHAVQNVWLR 419
           IY R+ P+E+P   + LD ++Q ++LIQ    QN++ +
Sbjct: 273 IYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTK 310


>AL356583-5|CAI16399.1|  396|Homo sapiens transcription factor B2,
           mitochondrial protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 306 IYKRQIPIEDPN*GKKLDGVRQAVFLIQQHAVQNVWLR 419
           IY R+ P+E+P   + LD ++Q ++LIQ    QN++ +
Sbjct: 273 IYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTK 310


>AK026835-1|BAB15566.1|  396|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23182 fis, clone LNG11207. ).
          Length = 396

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 306 IYKRQIPIEDPN*GKKLDGVRQAVFLIQQHAVQNVWLR 419
           IY R+ P+E+P   + LD ++Q ++LIQ    QN++ +
Sbjct: 273 IYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTK 310


>AK026314-1|BAB15441.1|  230|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22661 fis, clone HSI08059. ).
          Length = 230

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 306 IYKRQIPIEDPN*GKKLDGVRQAVFLIQQHAVQNVWLR 419
           IY R+ P+E+P   + LD ++Q ++LIQ    QN++ +
Sbjct: 107 IYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTK 144


>AF529366-1|AAQ09600.1|  396|Homo sapiens NS5ATP5 protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 306 IYKRQIPIEDPN*GKKLDGVRQAVFLIQQHAVQNVWLR 419
           IY R+ P+E+P   + LD ++Q ++LIQ    QN++ +
Sbjct: 273 IYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTK 310


>BC117140-1|AAI17141.1|  761|Homo sapiens protein-kinase,
           interferon-inducible double stranded RNA dependent
           inhibitor, r protein.
          Length = 761

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 453 LTSQLTSH*IWENLRFLLRHPVDVLMPTYFKVY 551
           LT Q +S+    N+ F ++H +D+++ TY K+Y
Sbjct: 712 LTDQRSSNLALLNINFDIKHDLDLMVDTYIKLY 744


>BC117138-1|AAI17139.1|  761|Homo sapiens protein-kinase,
           interferon-inducible double stranded RNA dependent
           inhibitor, r protein.
          Length = 761

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 453 LTSQLTSH*IWENLRFLLRHPVDVLMPTYFKVY 551
           LT Q +S+    N+ F ++H +D+++ TY K+Y
Sbjct: 712 LTDQRSSNLALLNINFDIKHDLDLMVDTYIKLY 744


>BC110304-1|AAI10305.1|  761|Homo sapiens protein-kinase,
           interferon-inducible double stranded RNA dependent
           inhibitor, r protein.
          Length = 761

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 453 LTSQLTSH*IWENLRFLLRHPVDVLMPTYFKVY 551
           LT Q +S+    N+ F ++H +D+++ TY K+Y
Sbjct: 712 LTDQRSSNLALLNINFDIKHDLDLMVDTYIKLY 744


>BC021992-1|AAH21992.1|  150|Homo sapiens PRKRIR protein protein.
          Length = 150

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 453 LTSQLTSH*IWENLRFLLRHPVDVLMPTYFKVY 551
           LT Q +S+    N+ F ++H +D+++ TY K+Y
Sbjct: 101 LTDQRSSNLALLNINFDIKHDLDLMVDTYIKLY 133


>AF081567-1|AAG01570.1|  761|Homo sapiens death associated protein 4
           protein.
          Length = 761

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +3

Query: 453 LTSQLTSH*IWENLRFLLRHPVDVLMPTYFKVY 551
           LT Q +S+    N+ F ++H +D+++ TY K+Y
Sbjct: 712 LTDQRSSNLALLNINFDIKHDLDLMVDTYIKLY 744


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,319,568
Number of Sequences: 237096
Number of extensions: 2261245
Number of successful extensions: 3153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3153
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)