Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31054
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0413 + 13639476-13639537,13639702-13639783,13639865-136399...    54   1e-07
05_06_0055 + 25235844-25235872,25237026-25237932                       31   0.67 
03_02_0021 - 5049705-5049713,5049744-5049770,5049877-5049940,505...    31   0.89 
05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119     29   3.6  
01_06_1073 - 34300089-34300235,34300783-34301031,34302509-343027...    29   3.6  
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666...    28   6.2  
07_01_0313 + 2216498-2216953                                           28   6.2  
04_04_1320 - 32623378-32623949,32624035-32624451,32624548-326248...    28   8.3  

>05_03_0413 +
           13639476-13639537,13639702-13639783,13639865-13639940,
           13640016-13640101,13640294-13640370,13641138-13641194,
           13641294-13641378,13642331-13642417,13642603-13642683,
           13643748-13643885,13643962-13644147,13644242-13644268
          Length = 347

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 503 LHHSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRK 637
           L ++GR+PSG+CGAAL IAA  H +  T +DIV +V V E+TL K
Sbjct: 173 LQNTGRKPSGLCGAALYIAALSHGYDYTKADIVAVVHVCEATLTK 217


>05_06_0055 + 25235844-25235872,25237026-25237932
          Length = 311

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 473 TQTGSANEE---GLHHSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKV 616
           T   S NEE   G   +  +PSG  GAA  +A+  H  + T S IVR+ +V
Sbjct: 19  TSNNSTNEELGGGGRKAADKPSGGGGAAAAVASSRHWSASTESRIVRVSRV 69


>03_02_0021 -
           5049705-5049713,5049744-5049770,5049877-5049940,
           5050019-5050806,5050888-5051046,5051778-5052419
          Length = 562

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +2

Query: 518 RRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRK 637
           R P  I  AA+ +A +L +  +T ++I ++  + E TLRK
Sbjct: 286 RNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRK 325


>05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119
          Length = 248

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +1

Query: 4   ASAIGQFVSADTKGGATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQQCIDIA 183
           A+  G    A T GGA G+G  +NAG G  +    L  A     A+C        C  IA
Sbjct: 28  ATFYGGSDGAGTMGGACGYGNLYNAGYGLNN--AALSSALFNDGAMC------GACYTIA 79

Query: 184 CN 189
           C+
Sbjct: 80  CD 81


>01_06_1073 -
           34300089-34300235,34300783-34301031,34302509-34302780,
           34303131-34303182,34303272-34303349,34303659-34303718,
           34303801-34303875,34304382-34304585,34304694-34304767,
           34304992-34305095,34305261-34305334,34305407-34305473,
           34306024-34306127
          Length = 519

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
 Frame = +1

Query: 4   ASAIGQFVSADTKGGATGFGRAFNAGIGQESKEITLRKARIGITALCQQLR---LNQQCI 174
           A++     +AD +GG +GF    +A +      +T    +     LCQ  +   L+  C+
Sbjct: 10  AASASAAAAADARGGMSGFAAPQHAIVKHGPGSVTHCGGKWTFAELCQSEQIWVLDCYCM 69

Query: 175 DIACNFYKMALSRHLTIGRPVTHTQAAVF 261
             AC F   A   H  +   V  TQ   F
Sbjct: 70  QWACKFATNATECHTNLNN-VQPTQVTDF 97


>11_06_0425 -
           23365108-23366028,23366182-23366340,23366445-23366640,
           23366995-23367527,23367817-23368272,23368507-23368758,
           23368890-23369007,23369836-23369993
          Length = 930

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 241 HTQAAVFT*PVGQRGPLIC*LM*VMLYHCAAINLVEHISNCHGL 372
           HTQAAV        GPL+  L    ++HC  +N V+++ +C  L
Sbjct: 65  HTQAAVVD------GPLVVPLDCEWIWHCHRLNPVQYLKDCKRL 102


>07_01_0313 + 2216498-2216953
          Length = 151

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 83  IPALNALPKPVAPPLVSADTNCPI 12
           IPA+ A+PKP  P +V A T  PI
Sbjct: 43  IPAVPAMPKPTIPTIVPAVTLPPI 66


>04_04_1320 -
           32623378-32623949,32624035-32624451,32624548-32624895,
           32625671-32625768,32625882-32626051,32627134-32627418,
           32628041-32628119,32628481-32628623,32629227-32629634
          Length = 839

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 537 HIPEGLLPE*WSPSSFADPV 478
           H P G LP  W P+SFAD V
Sbjct: 647 HNPGGRLPVTWYPASFADKV 666


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,419,555
Number of Sequences: 37544
Number of extensions: 462399
Number of successful extensions: 1306
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)