Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31054
(701 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U75276-1|AAB38876.1| 677|Homo sapiens TFIIB related factor hBRF... 118 2e-26
BC086856-1|AAH86856.1| 650|Homo sapiens BRF1 protein protein. 118 2e-26
U28838-1|AAC50170.1| 675|Homo sapiens TFIIIB 90 kDa subunit pro... 115 1e-25
BC016743-1|AAH16743.1| 208|Homo sapiens BRF1 protein protein. 86 1e-16
AJ297408-1|CAC04514.1| 222|Homo sapiens transcription factor II... 86 1e-16
BC133655-1|AAI33656.1| 184|Homo sapiens BRF1 protein protein. 74 4e-13
BC103861-1|AAI03862.1| 161|Homo sapiens BRF1 protein protein. 74 4e-13
BC103859-1|AAI03860.1| 134|Homo sapiens BRF1 protein protein. 74 4e-13
BC071637-1|AAH71637.1| 486|Homo sapiens BRF1 protein protein. 74 4e-13
AJ297407-1|CAC04513.1| 473|Homo sapiens transcription factor II... 74 4e-13
AJ297406-1|CAC04512.1| 134|Homo sapiens transcription factor II... 74 4e-13
BC103860-1|AAI03861.1| 58|Homo sapiens BRF1 protein protein. 37 0.080
X59268-1|CAA41958.1| 316|Homo sapiens IIB protein protein. 36 0.11
S44184-1|AAB23144.1| 311|Homo sapiens S300-II protein. 36 0.11
M76766-1|AAA61149.1| 316|Homo sapiens transcription factor prot... 36 0.11
BC021000-1|AAH21000.1| 316|Homo sapiens general transcription f... 36 0.11
BC020597-1|AAH20597.1| 316|Homo sapiens general transcription f... 36 0.11
AL445991-4|CAI41341.1| 316|Homo sapiens general transcription f... 36 0.11
BX538148-1|CAD98035.1| 710|Homo sapiens hypothetical protein pr... 35 0.24
AK123553-1|BAC85644.1| 710|Homo sapiens protein ( Homo sapiens ... 35 0.24
AK092949-1|BAC04006.1| 428|Homo sapiens protein ( Homo sapiens ... 35 0.24
AL445991-5|CAI41343.1| 231|Homo sapiens general transcription f... 35 0.32
BC055426-1|AAH55426.1| 710|Homo sapiens Bardet-Biedl syndrome 1... 34 0.57
AL445991-3|CAI41342.1| 224|Homo sapiens general transcription f... 32 1.7
>U75276-1|AAB38876.1| 677|Homo sapiens TFIIB related factor hBRF
protein.
Length = 677
Score = 118 bits (285), Expect = 2e-26
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = +3
Query: 249 SCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCLYILRFAS 428
+ C+Y+ CRTEGTPH+L+D+SD + + Y LG+ + L+R LCIN P DPCLYI RFA
Sbjct: 133 AACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAH 192
Query: 429 QLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
L+F +K HEVSMTALRL QRMK+D + G P
Sbjct: 193 LLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRP 225
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/85 (50%), Positives = 55/85 (64%)
Frame = +1
Query: 1 GASAIGQFVSADTKGGATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQQCIDI 180
G+SA+GQFVS D G G F+ +G+ES+ TL+ R I L QL+LNQ C+D
Sbjct: 50 GSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDT 109
Query: 181 ACNFYKMALSRHLTIGRPVTHTQAA 255
A NF+KMA+SRHLT GR + H AA
Sbjct: 110 AFNFFKMAVSRHLTRGRKMAHVIAA 134
Score = 74.1 bits (174), Expect = 4e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GRRPSG+CGAALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 220 HTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 274
>BC086856-1|AAH86856.1| 650|Homo sapiens BRF1 protein protein.
Length = 650
Score = 118 bits (285), Expect = 2e-26
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = +3
Query: 249 SCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCLYILRFAS 428
+ C+Y+ CRTEGTPH+L+D+SD + + Y LG+ + L+R LCIN P DPCLYI RFA
Sbjct: 106 AACLYLVCRTEGTPHMLLDLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAH 165
Query: 429 QLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
L+F +K HEVSMTALRL QRMK+D + G P
Sbjct: 166 LLEFGEKNHEVSMTALRLLQRMKRDWMHTGRRP 198
Score = 74.1 bits (174), Expect = 4e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GRRPSG+CGAALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 193 HTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 247
Score = 52.8 bits (121), Expect = 1e-06
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +1
Query: 139 LCQQLRLNQQCIDIACNFYKMALSRHLTIGRPVTHTQAA 255
L QL+LNQ C+D A NF+KMA+SRHLT GR + H AA
Sbjct: 69 LGNQLQLNQHCLDTAFNFFKMAVSRHLTRGRKMAHVIAA 107
>U28838-1|AAC50170.1| 675|Homo sapiens TFIIIB 90 kDa subunit
protein.
Length = 675
Score = 115 bits (277), Expect = 1e-25
Identities = 52/93 (55%), Positives = 67/93 (72%)
Frame = +3
Query: 249 SCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCLYILRFAS 428
+ C+Y+ CRTEGTPH+L+ +SD + + Y LG+ + L+R LCIN P DPCLYI RFA
Sbjct: 133 AACLYLVCRTEGTPHMLLVLSDLLQVNVYVLGKTFLLLARELCINAPAIDPCLYIPRFAH 192
Query: 429 QLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
L+F +K HEVSMTALRL QRMK+D + G P
Sbjct: 193 LLEFGEKNHEVSMTALRLLQRMKRDWMHTGRGP 225
Score = 85.8 bits (203), Expect = 1e-16
Identities = 43/85 (50%), Positives = 55/85 (64%)
Frame = +1
Query: 1 GASAIGQFVSADTKGGATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQQCIDI 180
G+SA+GQFVS D G G F+ +G+ES+ TL+ R I L QL+LNQ C+D
Sbjct: 50 GSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQDGRRHIHHLGNQLQLNQHCLDT 109
Query: 181 ACNFYKMALSRHLTIGRPVTHTQAA 255
A NF+KMA+SRHLT GR + H AA
Sbjct: 110 AFNFFKMAVSRHLTRGRKMAHVIAA 134
Score = 69.7 bits (163), Expect = 9e-12
Identities = 30/55 (54%), Positives = 40/55 (72%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GR PSG+CG ALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 220 HTGRGPSGLCGGALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 274
>BC016743-1|AAH16743.1| 208|Homo sapiens BRF1 protein protein.
Length = 208
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/85 (50%), Positives = 55/85 (64%)
Frame = +1
Query: 1 GASAIGQFVSADTKGGATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQQCIDI 180
G+SA+GQFVS D G G F+ +G+ES+ TL+ R I L QL+LNQ C+D
Sbjct: 50 GSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDT 109
Query: 181 ACNFYKMALSRHLTIGRPVTHTQAA 255
A NF+KMA+SRHLT GR + H AA
Sbjct: 110 AFNFFKMAVSRHLTRGRKMAHVIAA 134
Score = 42.3 bits (95), Expect = 0.002
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 249 SCCVYMTCRTEGTPHLLIDVSD 314
+ C+Y+ CRTEGTPH+L+D+SD
Sbjct: 133 AACLYLVCRTEGTPHMLLDLSD 154
>AJ297408-1|CAC04514.1| 222|Homo sapiens transcription factor II
B-related factor protein.
Length = 222
Score = 86.2 bits (204), Expect = 1e-16
Identities = 43/85 (50%), Positives = 55/85 (64%)
Frame = +1
Query: 1 GASAIGQFVSADTKGGATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQQCIDI 180
G+SA+GQFVS D G G F+ +G+ES+ TL+ R I L QL+LNQ C+D
Sbjct: 30 GSSAVGQFVSLDGAGKTPTLGGGFHVNLGKESRAQTLQNGRRHIHHLGNQLQLNQHCLDT 89
Query: 181 ACNFYKMALSRHLTIGRPVTHTQAA 255
A NF+KMA+SRHLT GR + H AA
Sbjct: 90 AFNFFKMAVSRHLTRGRKMAHVIAA 114
Score = 42.3 bits (95), Expect = 0.002
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +3
Query: 249 SCCVYMTCRTEGTPHLLIDVSD 314
+ C+Y+ CRTEGTPH+L+D+SD
Sbjct: 113 AACLYLVCRTEGTPHMLLDLSD 134
>BC133655-1|AAI33656.1| 184|Homo sapiens BRF1 protein protein.
Length = 184
Score = 74.1 bits (174), Expect = 4e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GRRPSG+CGAALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 16 HTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 70
>BC103861-1|AAI03862.1| 161|Homo sapiens BRF1 protein protein.
Length = 161
Score = 74.1 bits (174), Expect = 4e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GRRPSG+CGAALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 16 HTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 70
>BC103859-1|AAI03860.1| 134|Homo sapiens BRF1 protein protein.
Length = 134
Score = 74.1 bits (174), Expect = 4e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GRRPSG+CGAALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 16 HTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 70
>BC071637-1|AAH71637.1| 486|Homo sapiens BRF1 protein protein.
Length = 486
Score = 74.1 bits (174), Expect = 4e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GRRPSG+CGAALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 29 HTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 83
Score = 41.9 bits (94), Expect = 0.002
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 432 LKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
L+F +K HEVSMTALRL QRMK+D + G P
Sbjct: 3 LEFGEKNHEVSMTALRLLQRMKRDWMHTGRRP 34
>AJ297407-1|CAC04513.1| 473|Homo sapiens transcription factor II
B-related factor protein.
Length = 473
Score = 74.1 bits (174), Expect = 4e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GRRPSG+CGAALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 16 HTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 70
>AJ297406-1|CAC04512.1| 134|Homo sapiens transcription factor II
B-related factor protein.
Length = 134
Score = 74.1 bits (174), Expect = 4e-13
Identities = 32/55 (58%), Positives = 42/55 (76%)
Frame = +2
Query: 509 HSGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETPPFQ 673
H+GRRPSG+CGAALL+AAR+H+F RT +++ +VKV ESTLRK +TP Q
Sbjct: 16 HTGRRPSGLCGAALLVAARMHDFRRTVKEVISVVKVCESTLRKRLTEFEDTPTSQ 70
>BC103860-1|AAI03861.1| 58|Homo sapiens BRF1 protein protein.
Length = 58
Score = 36.7 bits (81), Expect = 0.080
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +2
Query: 566 LHEFSRTPSDIVRIVKVHESTLRKTACSNSETP 664
+H+F RT +++ +VKV ESTLRK +TP
Sbjct: 1 MHDFRRTVKEVISVVKVCESTLRKRLTEFEDTP 33
>X59268-1|CAA41958.1| 316|Homo sapiens IIB protein protein.
Length = 316
Score = 36.3 bits (80), Expect = 0.11
Identities = 22/100 (22%), Positives = 44/100 (44%)
Frame = +3
Query: 228 QAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCL 407
+A + S C+Y+ CR EG P ++ + ++GR + + +AL ++
Sbjct: 154 RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGD 213
Query: 408 YILRFASQLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
++ RF S L +V M A + ++ + + G P
Sbjct: 214 FMSRFCSNLCL---PKQVQMAATHIARKAVELDLVPGRSP 250
>S44184-1|AAB23144.1| 311|Homo sapiens S300-II protein.
Length = 311
Score = 36.3 bits (80), Expect = 0.11
Identities = 22/100 (22%), Positives = 44/100 (44%)
Frame = +3
Query: 228 QAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCL 407
+A + S C+Y+ CR EG P ++ + ++GR + + +AL ++
Sbjct: 149 RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGD 208
Query: 408 YILRFASQLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
++ RF S L +V M A + ++ + + G P
Sbjct: 209 FMSRFCSNLCL---PKQVQMAATHIARKAVELDLVPGRSP 245
>M76766-1|AAA61149.1| 316|Homo sapiens transcription factor
protein.
Length = 316
Score = 36.3 bits (80), Expect = 0.11
Identities = 22/100 (22%), Positives = 44/100 (44%)
Frame = +3
Query: 228 QAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCL 407
+A + S C+Y+ CR EG P ++ + ++GR + + +AL ++
Sbjct: 154 RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGD 213
Query: 408 YILRFASQLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
++ RF S L +V M A + ++ + + G P
Sbjct: 214 FMSRFCSNLCL---PKQVQMAATHIARKAVELDLVPGRSP 250
>BC021000-1|AAH21000.1| 316|Homo sapiens general transcription
factor IIB protein.
Length = 316
Score = 36.3 bits (80), Expect = 0.11
Identities = 22/100 (22%), Positives = 44/100 (44%)
Frame = +3
Query: 228 QAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCL 407
+A + S C+Y+ CR EG P ++ + ++GR + + +AL ++
Sbjct: 154 RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGD 213
Query: 408 YILRFASQLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
++ RF S L +V M A + ++ + + G P
Sbjct: 214 FMSRFCSNLCL---PKQVQMAATHIARKAVELDLVPGRSP 250
>BC020597-1|AAH20597.1| 316|Homo sapiens general transcription
factor IIB protein.
Length = 316
Score = 36.3 bits (80), Expect = 0.11
Identities = 22/100 (22%), Positives = 44/100 (44%)
Frame = +3
Query: 228 QAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCL 407
+A + S C+Y+ CR EG P ++ + ++GR + + +AL ++
Sbjct: 154 RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGD 213
Query: 408 YILRFASQLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
++ RF S L +V M A + ++ + + G P
Sbjct: 214 FMSRFCSNLCL---PKQVQMAATHIARKAVELDLVPGRSP 250
>AL445991-4|CAI41341.1| 316|Homo sapiens general transcription
factor IIB protein.
Length = 316
Score = 36.3 bits (80), Expect = 0.11
Identities = 22/100 (22%), Positives = 44/100 (44%)
Frame = +3
Query: 228 QAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCL 407
+A + S C+Y+ CR EG P ++ + ++GR + + +AL ++
Sbjct: 154 RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGD 213
Query: 408 YILRFASQLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
++ RF S L +V M A + ++ + + G P
Sbjct: 214 FMSRFCSNLCL---PKQVQMAATHIARKAVELDLVPGRSP 250
>BX538148-1|CAD98035.1| 710|Homo sapiens hypothetical protein
protein.
Length = 710
Score = 35.1 bits (77), Expect = 0.24
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 354 NMLDQVDSSTMVQHHLHQLADEGSPLSYRSCKHSSL 247
N + ++ST +QHHL D GSP SY ++S L
Sbjct: 608 NYSSEFEASTYIQHHLQNATDSGSPSSYILNEYSKL 643
>AK123553-1|BAC85644.1| 710|Homo sapiens protein ( Homo sapiens
cDNA FLJ41559 fis, clone CTONG1000087. ).
Length = 710
Score = 35.1 bits (77), Expect = 0.24
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 354 NMLDQVDSSTMVQHHLHQLADEGSPLSYRSCKHSSL 247
N + ++ST +QHHL D GSP SY ++S L
Sbjct: 608 NYSSEFEASTYIQHHLQNATDSGSPSSYILNEYSKL 643
>AK092949-1|BAC04006.1| 428|Homo sapiens protein ( Homo sapiens
cDNA FLJ35630 fis, clone SPLEN2011419. ).
Length = 428
Score = 35.1 bits (77), Expect = 0.24
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 354 NMLDQVDSSTMVQHHLHQLADEGSPLSYRSCKHSSL 247
N + ++ST +QHHL D GSP SY ++S L
Sbjct: 326 NYSSEFEASTYIQHHLQNATDSGSPSSYILNEYSKL 361
>AL445991-5|CAI41343.1| 231|Homo sapiens general transcription
factor IIB protein.
Length = 231
Score = 34.7 bits (76), Expect = 0.32
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +3
Query: 228 QAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCL 407
+A + S C+Y+ CR EG P ++ + ++GR + + +AL ++
Sbjct: 149 RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGD 208
Query: 408 YILRFASQL 434
++ RF S L
Sbjct: 209 FMSRFCSNL 217
>BC055426-1|AAH55426.1| 710|Homo sapiens Bardet-Biedl syndrome 12
protein.
Length = 710
Score = 33.9 bits (74), Expect = 0.57
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 354 NMLDQVDSSTMVQHHLHQLADEGSPLSYRSCKHSSL 247
N + + ST +QHHL D GSP SY ++S L
Sbjct: 608 NYSSEFEVSTYIQHHLQNATDSGSPSSYILNEYSKL 643
>AL445991-3|CAI41342.1| 224|Homo sapiens general transcription
factor IIB protein.
Length = 224
Score = 32.3 bits (70), Expect = 1.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 228 QAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRAL 374
+A + S C+Y+ CR EG P ++ + ++GR + + +AL
Sbjct: 153 RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKAL 201
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,074,949
Number of Sequences: 237096
Number of extensions: 2479305
Number of successful extensions: 6055
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6055
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -