Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31054
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 103 2e-22
AF022981-12|AAG24202.2| 306|Caenorhabditis elegans Tfii(two)b (... 32 0.46
AC024771-1|AAK70658.2| 315|Caenorhabditis elegans Serpentine re... 30 1.4
U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z49967-6|CAA90253.1| 341|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z49127-6|CAA88947.1| 454|Caenorhabditis elegans Hypothetical pr... 28 7.4
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 28 7.4
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 103 bits (246), Expect = 2e-22
Identities = 50/91 (54%), Positives = 61/91 (67%)
Frame = +3
Query: 255 CVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCLYILRFASQL 434
C+Y+TCR E T HLL+D SD + + LGR LSR+L IN+P TDPCLYI+RFA L
Sbjct: 130 CMYITCRLENTAHLLLDFSDVTQINVFDLGRNLNYLSRSLRINLPSTDPCLYIMRFACVL 189
Query: 435 KFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
F DKQ EV A RL QRMK+D ++ G P
Sbjct: 190 DFGDKQKEVVNLATRLVQRMKRDWMSTGRRP 220
Score = 61.7 bits (143), Expect = 5e-10
Identities = 29/51 (56%), Positives = 38/51 (74%)
Frame = +2
Query: 512 SGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSETP 664
+GRRP+GICGAALLIAAR F+R+ +DIVR+V + E +RK S+TP
Sbjct: 216 TGRRPTGICGAALLIAARSLNFNRSINDIVRVVHISEGVIRKRLDEFSQTP 266
Score = 61.3 bits (142), Expect = 7e-10
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +1
Query: 1 GASAIGQFVSADTKGGATGFGRAFNAGIG-QESKEITLRKARIGITALCQQLRLNQQCID 177
G + +GQFVS++ + A F G+G QES+E+T K R I L QLR+N C++
Sbjct: 50 GHTLVGQFVSSE-RAAANNFN-----GMGSQESREMTYAKGRKVIDELGSQLRINSHCMN 103
Query: 178 IACNFYKMALSRHLTIGR 231
A NFYKM +SR+LT GR
Sbjct: 104 TAFNFYKMCVSRNLTRGR 121
>AF022981-12|AAG24202.2| 306|Caenorhabditis elegans Tfii(two)b
(general transcriptionfactor) protein 1 protein.
Length = 306
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = +3
Query: 249 SCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCINIPPTDPCLYILRFAS 428
+ C+Y+ CR +G P ++ + ++GR + + R+L N+ ++ RF
Sbjct: 151 AACLYIACRKDGVPRTFKEICAVSRVSKKEIGRCFKIIVRSLETNLEQITSADFMSRFCG 210
Query: 429 QL 434
L
Sbjct: 211 NL 212
>AC024771-1|AAK70658.2| 315|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 23 protein.
Length = 315
Score = 30.3 bits (65), Expect = 1.4
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = -1
Query: 551 VMQLHIFRRVFSPSDGVLLHSLIQSECSHADLVLFVFEFQLRCE--PKYVQARISRRYVD 378
V L+ ++ P G+LLHS+ + DLV + +Q CE P + + I R + +
Sbjct: 53 VFHLNTQLQILVPLFGLLLHSIGRLGLHSTDLVAYFGNWQDPCEIIPNFYRCLILRGFYN 112
Query: 377 AQSP*QFEICSTKL----IAAQWYSITY 306
+CS L I A YSITY
Sbjct: 113 VGLA-LSSMCSVALVIERIVALKYSITY 139
>U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical
protein F52E4.7 protein.
Length = 848
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 339 LGRAYFKLSRALCINIPPTDPCLYILRFASQLKFEDKQHEVSMTALR-----LDQRMKKD 503
L +AYF L RA+C I Y +S +KFE+ HE+ +T LDQ+ K
Sbjct: 650 LEKAYFNLCRAVCDGIQKAAANQYSKSPSSVVKFEN-YHELYLTLSELKISCLDQQRKDA 708
Query: 504 SITRGEDPPEYVE 542
+ E YV+
Sbjct: 709 KALKEEHIDAYVK 721
>Z49967-6|CAA90253.1| 341|Caenorhabditis elegans Hypothetical
protein F54C9.7 protein.
Length = 341
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 361 CHGLCASTYLLLIRACTYFGSHRS 432
C G+C S Y +I+ C Y +HRS
Sbjct: 37 CDGMCHSNYSDIIKECQYGCNHRS 60
>Z92838-1|CAB07406.1| 157|Caenorhabditis elegans Hypothetical
protein T03D8.2 protein.
Length = 157
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 317 CTIVLLSTWSSIFQTVTGSVHQHTSY*SVLVHTSVRI-AVEIRRQTTRGQHDCTQTG 484
C IV LST + + + H + VLV R + ++ RG++DC G
Sbjct: 98 CAIVRLSTGAEVCAYIPNVGHNLQEHSQVLVKGGRRRDLISVKANIVRGKYDCAPAG 154
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/84 (20%), Positives = 38/84 (45%)
Frame = +2
Query: 407 VHTSVRIAVEIRRQTTRGQHDCTQTGSANEEGLHHSGRRPSGICGAALLIAARLHEFSRT 586
V +++A E + T+ +HD T EE LHH+ + + + + E +
Sbjct: 1068 VEGDLKVAQENIDEITKQKHDVETTLKRKEEDLHHTNAKLAENNSIIAKLQRLIKELTAR 1127
Query: 587 PSDIVRIVKVHESTLRKTACSNSE 658
+++ ++ ++ +K+ S SE
Sbjct: 1128 NAELEEELEAERNSRQKSDRSRSE 1151
>Z49127-6|CAA88947.1| 454|Caenorhabditis elegans Hypothetical
protein F13D12.6 protein.
Length = 454
Score = 27.9 bits (59), Expect = 7.4
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -3
Query: 339 VDSSTMVQHHLHQLADEGSPLSYR-SCKHSSLGMCYRPAYSQMSG*GHFVKITGNV--NA 169
VDS +H H + D+ + SC H+ C ++S+ S G FV+ T N
Sbjct: 208 VDSLVNFLYH-HGVVDQAKWEHMKTSCCHNDTDACPWHSFSEFSACGEFVEATQQTAWNG 266
Query: 168 LLV*TKLLA*CCDTNSSF 115
L + A C T++SF
Sbjct: 267 GLNPYNMYADCISTSASF 284
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/84 (20%), Positives = 38/84 (45%)
Frame = +2
Query: 407 VHTSVRIAVEIRRQTTRGQHDCTQTGSANEEGLHHSGRRPSGICGAALLIAARLHEFSRT 586
V +++A E + T+ +HD T EE LHH+ + + + + E +
Sbjct: 1068 VEGDLKVAQENIDEITKQKHDVETTLKRKEEDLHHTNAKLAENNSIIAKLQRLIKELTAR 1127
Query: 587 PSDIVRIVKVHESTLRKTACSNSE 658
+++ ++ ++ +K+ S SE
Sbjct: 1128 NAELEEELEAERNSRQKSDRSRSE 1151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,117,137
Number of Sequences: 27780
Number of extensions: 386498
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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