Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31054
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   4.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 357  KLSRALCINIPPTDPCLYI 413
            KL   L + +PP+ P LY+
Sbjct: 1394 KLHYTLTVQVPPSAPVLYV 1412


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 357  KLSRALCINIPPTDPCLYI 413
            KL   L + +PP+ P LY+
Sbjct: 1390 KLHYTLTVQVPPSAPVLYV 1408


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 530 RRVFSPSDGVLLHSLIQSECSHA-DLVLFVFEFQLRCEPKYVQARISRRYV 381
           RR    SD VLL      E S A + V F+ E  LR E  Y+Q R   +YV
Sbjct: 429 RRGSESSDSVLL----SPEASKATEAVEFIAE-HLRNEDLYIQTREDWKYV 474


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 314 CCTIVLLSTWSSIFQTV 364
           C T+V L+ WS I  T+
Sbjct: 387 CLTVVCLAFWSFIVSTI 403


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 467 DCTQTGSANEEGLHHSGRRPSGICGAALLIAARLH 571
           D  + GS       +  +  +G CG+A+  A R+H
Sbjct: 100 DTNRGGSPKLTPYPNWAQNKAGACGSAITTAYRIH 134


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 318 QHHLHQLADEGSPLSYRS 265
           Q++LHQ A     L+YRS
Sbjct: 181 QYYLHQFATGQPDLNYRS 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,484
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)