Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31054
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family...    50   1e-06
At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family...    49   3e-06
At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family...    48   5e-06
At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family...    31   0.56 
At1g12560.1 68414.m01457 expansin, putative (EXP7) similar to ex...    30   1.7  
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '...    29   3.0  
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '...    29   3.0  
At4g01200.1 68417.m00158 C2 domain-containing protein contains P...    28   6.9  
At2g40610.1 68415.m05009 expansin, putative (EXP8) similar to ex...    28   6.9  
At4g04450.1 68417.m00647 WRKY family transcription factor simila...    27   9.1  
At3g27010.1 68416.m03379 TCP family transcription factor, putati...    27   9.1  
At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein sim...    27   9.1  

>At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 600

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
 Frame = +3

Query: 189 FLQNGLIQTFDYRQAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSR 368
           F +  + Q F   +      + C+Y+TCR      LLID S  + +  Y+LG  Y +L  
Sbjct: 101 FFEMAVEQNFTKGRRTELVQASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCE 160

Query: 369 ALCI----NIPP-TDPCLYILRFASQLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
            L +    N     DP +++ RF++ L       +V  TA  +   MK+D I  G  P
Sbjct: 161 MLYLVENRNYEKLVDPSIFMDRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKP 218



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 24/50 (48%), Positives = 31/50 (62%)
 Frame = +2

Query: 512 SGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSET 661
           +GR+PSGICGAAL  AA  H    + +DIV IV + E+TL K      +T
Sbjct: 214 TGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATLTKRLIEFGDT 263


>At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 565

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
 Frame = +3

Query: 249 SCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSRALCI----NIPP-TDPCLYI 413
           S C+Y+TCR      LLID S  + +  Y LG  Y +L   L I    N     DP ++I
Sbjct: 121 SSCLYLTCRQFKLAVLLIDFSSYLRVSVYDLGSVYLQLCDMLYITENHNYEKLVDPSIFI 180

Query: 414 LRFASQLKFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
            RF++ L      +++ +TA  +   MK+D +  G  P
Sbjct: 181 PRFSNMLLKGAHNNKLVLTATHIIASMKRDWMQTGRKP 218



 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 24/50 (48%), Positives = 31/50 (62%)
 Frame = +2

Query: 512 SGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRKTACSNSET 661
           +GR+PSGICGAAL  AA  H    + +DIV IV + E+TL K      +T
Sbjct: 214 TGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATLTKRLIEFGDT 263


>At2g01280.1 68415.m00042 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 561

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
 Frame = +3

Query: 189 FLQNGLIQTFDYRQAGNTYPSCCVYMTCRTEGTPHLLIDVSDAVPLCCYQLGRAYFKLSR 368
           F +  + Q F   +      S C+Y+ CR      L ID S  + +  Y+LG  Y +L  
Sbjct: 96  FYEAAMDQNFTKGRRAELVQSSCLYLACRDMKISLLFIDFSSYLRVSVYELGSVYLQLCE 155

Query: 369 ALCI----NIPP-TDPCLYILRFASQL--KFEDKQHEVSMTALRLDQRMKKDSITRGEDP 527
            L +    N     DP ++I RF + L      K  +V+ TA  +   MK+D I  G  P
Sbjct: 156 MLYLVQNKNYEELVDPSIFIPRFTNSLLKGAHAKAKDVANTAKNIISSMKRDWIQTGRKP 215



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 19/42 (45%), Positives = 30/42 (71%)
 Frame = +2

Query: 512 SGRRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRK 637
           +GR+PSGICGAA+ +AA  H    + +DI ++V + E+T+ K
Sbjct: 211 TGRKPSGICGAAIYMAALSHGIMYSRADIAKVVHMCEATITK 252


>At4g36650.1 68417.m05201 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 503

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 518 RRPSGICGAALLIAARLHEFSRTPSDIVRIVKVHESTLRK 637
           R P  I  AA+ +A +L +  +T ++I +I  + E TLRK
Sbjct: 266 RNPISISAAAIYLACQLEDKRKTQAEICKITGLTEVTLRK 305


>At1g12560.1 68414.m01457 expansin, putative (EXP7) similar to
           expansin GI:2828241 from [Brassica napus];
           alpha-expansin gene family, PMID:11641069
          Length = 262

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   ASAIGQFVSADTKGGATGFGRAFNAGIG 87
           A+  G     +T GGA G+G  FN+G G
Sbjct: 42  ATFYGDETGGETMGGACGYGNLFNSGYG 69


>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 139  LCQQLRLNQQCIDIACNFYKMALSRHLTIGRPVTHTQA 252
            LCQ L L+  C  +  NF +  +  H     P T  QA
Sbjct: 964  LCQVLHLSDACTSMVGNFLEYVIENHRIYEEPATTFQA 1001


>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
            'Morpheus molecule') [Arabidopsis thaliana]
            gi|8132770|gb|AAF73381.1|
          Length = 2001

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 139  LCQQLRLNQQCIDIACNFYKMALSRHLTIGRPVTHTQA 252
            LCQ L L+  C  +  NF +  +  H     P T  QA
Sbjct: 964  LCQVLHLSDACTSMVGNFLEYVIENHRIYEEPATTFQA 1001


>At4g01200.1 68417.m00158 C2 domain-containing protein contains Pfam
           profile PF00168: C2 domain
          Length = 250

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = +2

Query: 518 RRPSGICGAALLIAARLHEFSRTPSDIVRIV-KVHES-TLRK--TACSNSETPPFQGPEP 685
           RRPSG     L IAA + + S  P+D  + V ++  S  +RK  +A S+SE       E 
Sbjct: 117 RRPSGKFHGVLNIAAMVMDASELPADFFKSVQEIRRSRKMRKSRSAVSSSENGSADDGES 176

Query: 686 SKSS 697
           SK +
Sbjct: 177 SKEN 180


>At2g40610.1 68415.m05009 expansin, putative (EXP8) similar to
           expansin 2 GI:7025493 from [Zinnia elegans];
           alpha-expansin gene family, PMID:11641069
          Length = 253

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 28  SADTKGGATGFGRAFNAGIGQESKEITLRKARIGIT-ALCQQLRLN 162
           ++ T GGA G+G  +  G G  +  ++      G+T   C +++ N
Sbjct: 43  ASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCN 88


>At4g04450.1 68417.m00647 WRKY family transcription factor similar
           to A. fatua wild oat ABF2 DNA-binding protein, GenBank
           accession number S61414
          Length = 528

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 46  GATGFGRAFNAGIGQESKEITLRKARIGITALCQQLRLNQQC 171
           G  G   A +  I Q + E T+RKAR+ + A  +   L+  C
Sbjct: 254 GGNGSENASSKVIEQAAAEATMRKARVSVRARSEAPMLSDGC 295


>At3g27010.1 68416.m03379 TCP family transcription factor, putative
           similar to PCF2 [(GI:2580440) Oryza sativa]
          Length = 314

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   GASAIGQFVSADTKGGATGFGRAFNAGIG 87
           G+   G  +S D  GG++  GR  N GIG
Sbjct: 156 GSLTAGLMISHDLDGGSSSSGRPLNWGIG 184


>At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein
           similar to beta-xylosidase A GB:BAA28267 from
           [Aspergillus oryzae]
          Length = 781

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 531 PEGLLPE*WSPSSFADPV 478
           P G LPE W P  FAD V
Sbjct: 574 PSGRLPETWYPQEFADKV 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,588
Number of Sequences: 28952
Number of extensions: 350527
Number of successful extensions: 942
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)