Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31053
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    30   0.29 
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   2.7  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.3  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   8.4  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   8.4  

>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 513 QDNDYLHKGHRPPLPSFSACFASNF 587
           QDN Y+  G+RPP  SF  C  S F
Sbjct: 59  QDNQYIISGYRPPSFSFYLCVKSIF 83


>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 313 CPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAA 432
           CPL  TP+ +HL+D ++   +K GV       G L    A
Sbjct: 206 CPL--TPDTEHLVDEKLLASMKKGVKIINTSRGGLVDTKA 243


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 471 VVERVPFQTFATLLQDNDYLHKGHRPPLPSFSA 569
           V E+  F+TF  LL+D   L +  RP   S +A
Sbjct: 77  VTEKTNFETFIPLLEDTLSLLEKERPVFSSLAA 109


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 81  KSKVQLRHKKFTPNDFWLCCFCSIKI 4
           K  +Q +HKK   NDF L  F  ++I
Sbjct: 103 KEPIQAKHKKNVENDFLLQRFRKVRI 128


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 232 PASQSIGGHALGSNIRFHFPHLRLFQSREDG 140
           P S    G ALG   R+  PHLR    RE G
Sbjct: 161 PVSSRASG-ALGEKGRYIAPHLRAGSGRESG 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,248
Number of Sequences: 5004
Number of extensions: 68420
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)