Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31053
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)                      31   0.96 
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   3.9  
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)               28   6.7  
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_13462| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = +3

Query: 510 LQDNDYLHKGHRPPLPSFSACFASNFPNPHWDR*HFGRISLAYVAFIWRSRIYFLVSSV 686
           L+DN++L   HRPPL SF +CF S F   H +  +     + ++AFI  + +Y  +  V
Sbjct: 230 LRDNEFLEDSHRPPLNSFKSCFKSMF-KIHTETGNIWTHFIGFLAFI-AAMLYMYIRPV 286


>SB_10632| Best HMM Match : DEP (HMM E-Value=0.78)
          Length = 500

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 267 RGKAPASGSHPCLRRNPSEDTLWDP-ISDST 178
           RG+AP++ SHP   R PS  T   P + DST
Sbjct: 432 RGRAPSNSSHPSSPRPPSRSTALSPELLDST 462


>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
 Frame = +1

Query: 427 AAEQAEEFVRKVWE--ASWNVCHFR-HLPRCYKTTIIYTKDIDRLYLRSAHVLHQIFRIH 597
           A +  +    K WE  A+W     R   P C  TT  Y   +   Y R       I  I 
Sbjct: 356 ALQGTDMLTDKQWERLANWLPDRARIKRPVCVFTTEKYGYSLRTFYQRCQEEEETILLIK 415

Query: 598 TGTGNILDA---SPWLTWHSFGGRESTFWSRPSIG 693
           T TG+I  A   SPWL     G ++ T++    IG
Sbjct: 416 TTTGDIFGAFCTSPWLE-RLEGPKDLTYFGTALIG 449


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 180 WNLILDPKACPPMDCDAGKDGIP 248
           WN +L+P    P DCD   +G+P
Sbjct: 749 WNDVLNPLLAEPPDCDPTYEGLP 771


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 412 LPNQSHRITRQLSKLQP-FRHPTDVDPPVLKAAD 314
           L ++ H+  + + K+ P F+ P D  PP++K  D
Sbjct: 70  LEDERHKFIQDMMKINPDFKPPADYKPPLIKIQD 103


>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
          Length = 2056

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +3

Query: 624  ISLAYVAFIWRSRIYFLVSSVYRKFQIAK 710
            +SL YV+ ++    +  +S +YRK+Q+++
Sbjct: 1300 VSLGYVSIVFTENKFNKISRIYRKYQVSE 1328


>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1205

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
 Frame = +1

Query: 316 PLPSTPED-----QHLLDAEMAEVLKAG--VLSDEIDLGALAHNAAEQAEEFVRKVWEAS 474
           P+P+TPE+     Q +++A + + + +   + +  + LGAL   +   A +   + W+ S
Sbjct: 118 PIPATPENDGAVPQKVVNATLQDFMYSNEALRAVALPLGALGGGSVALAGDGGLRQWQIS 177

Query: 475 WNVCHFRHLPRCY 513
             V H  H+P  +
Sbjct: 178 GAVNHTAHVPNSF 190


>SB_13462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 23/77 (29%), Positives = 35/77 (45%)
 Frame = -3

Query: 657 TAK*MPRKPRRCVQNVTCPSVDSENLMQNMR*TKVEAVYVLCVNNRCLVATWQMSEMAHV 478
           T + + R+    V+ V  P  D +      +   +EA      N R L+ T   +  + +
Sbjct: 80  TCRSLKRQNHMIVECVPIPKEDGDMAPIYFKKAIMEADVEWAQNKR-LIDTRDKTLRSSI 138

Query: 477 PRRLPYFANEFLGLFGG 427
           PR LP+F  EF GL GG
Sbjct: 139 PRGLPFFHVEF-GLDGG 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,401,552
Number of Sequences: 59808
Number of extensions: 524719
Number of successful extensions: 1433
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)