Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31053
         (728 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001487-1|AAN71242.1|  444|Drosophila melanogaster LD23846p pro...   139   4e-33
AE014297-3179|AAN13909.1|  444|Drosophila melanogaster CG5315-PC...   139   4e-33
AE014297-3178|AAF56016.2|  444|Drosophila melanogaster CG5315-PA...   139   4e-33
AE014297-3180|AAF56017.3|  362|Drosophila melanogaster CG5315-PB...   111   1e-24
BT006335-1|AAP20831.1|  450|Drosophila melanogaster HL06052p pro...    38   0.019
AY113494-1|AAM29499.1|  339|Drosophila melanogaster RE52005p pro...    38   0.019
AE014297-4278|AAF56826.3|  385|Drosophila melanogaster CG33203-P...    38   0.019
AY089441-1|AAL90179.1|  251|Drosophila melanogaster AT26009p pro...    31   2.1  
AE014296-202|AAF47461.2|  251|Drosophila melanogaster CG9129-PA ...    31   2.1  
AY094970-1|AAM11323.1| 1118|Drosophila melanogaster SD09067p pro...    29   6.5  
AJ243904-1|CAB64937.1|  773|Drosophila melanogaster SF1 protein ...    29   6.5  
AE014297-4114|AAF56695.2| 1120|Drosophila melanogaster CG3368-PA...    29   6.5  
AE014297-2366|AAF55430.3|  787|Drosophila melanogaster CG5836-PA...    29   6.5  
AE013599-2291|AAM68500.1|  697|Drosophila melanogaster CG4700-PC...    29   6.5  

>BT001487-1|AAN71242.1|  444|Drosophila melanogaster LD23846p
           protein.
          Length = 444

 Score =  139 bits (336), Expect = 4e-33
 Identities = 76/128 (59%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
 Frame = +1

Query: 310 GCPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWNVCH 489
           GCPLPSTPED  L++AEM EVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASW VCH
Sbjct: 106 GCPLPSTPEDTQLIEAEMTEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWKVCH 165

Query: 490 FRHLPRCYKTTIIYTKDIDRLYLRSAHV-LHQIFRIHTGTGNILDASPWLTWHSFGGRES 666
           +++LP+  +      +   R  L S       IFR+HT TGNI   +  L   +F G   
Sbjct: 166 YKNLPKWLQDNDFLHRG-HRPPLPSFRACFKSIFRVHTETGNIW--THLLGCIAFIGVAL 222

Query: 667 TFWSRPSI 690
            F SRPS+
Sbjct: 223 YFISRPSV 230


>AE014297-3179|AAN13909.1|  444|Drosophila melanogaster CG5315-PC,
           isoform C protein.
          Length = 444

 Score =  139 bits (336), Expect = 4e-33
 Identities = 76/128 (59%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
 Frame = +1

Query: 310 GCPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWNVCH 489
           GCPLPSTPED  L++AEM EVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASW VCH
Sbjct: 106 GCPLPSTPEDTQLIEAEMTEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWKVCH 165

Query: 490 FRHLPRCYKTTIIYTKDIDRLYLRSAHV-LHQIFRIHTGTGNILDASPWLTWHSFGGRES 666
           +++LP+  +      +   R  L S       IFR+HT TGNI   +  L   +F G   
Sbjct: 166 YKNLPKWLQDNDFLHRG-HRPPLPSFRACFKSIFRVHTETGNIW--THLLGCIAFIGVAL 222

Query: 667 TFWSRPSI 690
            F SRPS+
Sbjct: 223 YFISRPSV 230


>AE014297-3178|AAF56016.2|  444|Drosophila melanogaster CG5315-PA,
           isoform A protein.
          Length = 444

 Score =  139 bits (336), Expect = 4e-33
 Identities = 76/128 (59%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
 Frame = +1

Query: 310 GCPLPSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWNVCH 489
           GCPLPSTPED  L++AEM EVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASW VCH
Sbjct: 106 GCPLPSTPEDTQLIEAEMTEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWKVCH 165

Query: 490 FRHLPRCYKTTIIYTKDIDRLYLRSAHV-LHQIFRIHTGTGNILDASPWLTWHSFGGRES 666
           +++LP+  +      +   R  L S       IFR+HT TGNI   +  L   +F G   
Sbjct: 166 YKNLPKWLQDNDFLHRG-HRPPLPSFRACFKSIFRVHTETGNIW--THLLGCIAFIGVAL 222

Query: 667 TFWSRPSI 690
            F SRPS+
Sbjct: 223 YFISRPSV 230


>AE014297-3180|AAF56017.3|  362|Drosophila melanogaster CG5315-PB,
           isoform B protein.
          Length = 362

 Score =  111 bits (266), Expect = 1e-24
 Identities = 67/124 (54%), Positives = 80/124 (64%), Gaps = 1/124 (0%)
 Frame = +1

Query: 322 PSTPEDQHLLDAEMAEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWNVCHFRHL 501
           P T ++Q   +A M EVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASW VCH+++L
Sbjct: 29  PDTVKEQ-AENAVMTEVLKAGVLSDEIDLGALAHNAAEQAEEFVRKVWEASWKVCHYKNL 87

Query: 502 PRCYKTTIIYTKDIDRLYLRSAHV-LHQIFRIHTGTGNILDASPWLTWHSFGGRESTFWS 678
           P+  +      +   R  L S       IFR+HT TGNI   +  L   +F G    F S
Sbjct: 88  PKWLQDNDFLHRG-HRPPLPSFRACFKSIFRVHTETGNIW--THLLGCIAFIGVALYFIS 144

Query: 679 RPSI 690
           RPS+
Sbjct: 145 RPSV 148


>BT006335-1|AAP20831.1|  450|Drosophila melanogaster HL06052p
           protein.
          Length = 450

 Score = 37.5 bits (83), Expect = 0.019
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 459 SMGGVVERVPFQTFATLLQDNDYLHKGHRPPLPSFSACFASNF 587
           S G VV+ +P+Q   T LQ N Y+ +G+R PL +F  C  S F
Sbjct: 167 SDGNVVQLLPWQDMPTYLQFNPYVLRGYR-PLQTFKGCLLSLF 208


>AY113494-1|AAM29499.1|  339|Drosophila melanogaster RE52005p
           protein.
          Length = 339

 Score = 37.5 bits (83), Expect = 0.019
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 459 SMGGVVERVPFQTFATLLQDNDYLHKGHRPPLPSFSACFASNF 587
           S G VV+ +P+Q   T LQ N Y+ +G+R PL +F  C  S F
Sbjct: 121 SDGNVVQLLPWQDMPTYLQFNPYVLRGYR-PLQTFKGCLLSLF 162


>AE014297-4278|AAF56826.3|  385|Drosophila melanogaster CG33203-PC
           protein.
          Length = 385

 Score = 37.5 bits (83), Expect = 0.019
 Identities = 19/43 (44%), Positives = 26/43 (60%)
 Frame = +3

Query: 459 SMGGVVERVPFQTFATLLQDNDYLHKGHRPPLPSFSACFASNF 587
           S G VV+ +P+Q   T LQ N Y+ +G+R PL +F  C  S F
Sbjct: 167 SDGNVVQLLPWQDMPTYLQFNPYVLRGYR-PLQTFKGCLLSLF 208


>AY089441-1|AAL90179.1|  251|Drosophila melanogaster AT26009p
           protein.
          Length = 251

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 23/85 (27%), Positives = 30/85 (35%)
 Frame = -3

Query: 270 LRGKAPASGSHPCLRRNPSEDTLWDPISDSTSHIFACFNHAKMGNWQPLAAVTFVSGTRT 91
           LRG    +    C  RN      W P S+ T  +   FN  KM     +  +  V    +
Sbjct: 144 LRGPCKKANDCVCYERNRERREQWCPTSELTKRMLPLFNLCKMQTGNIVLILRLVCNGPS 203

Query: 90  VIRKSKVQLRHKKFTPNDFWLCCFC 16
           V+    VQ    K   N    CC C
Sbjct: 204 VVSSFPVQRPVCKDPCN---CCCPC 225


>AE014296-202|AAF47461.2|  251|Drosophila melanogaster CG9129-PA
           protein.
          Length = 251

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 23/85 (27%), Positives = 30/85 (35%)
 Frame = -3

Query: 270 LRGKAPASGSHPCLRRNPSEDTLWDPISDSTSHIFACFNHAKMGNWQPLAAVTFVSGTRT 91
           LRG    +    C  RN      W P S+ T  +   FN  KM     +  +  V    +
Sbjct: 144 LRGPCKKANDCVCYERNRERREQWCPTSELTKRMLPLFNLCKMQTGNIVLILRLVCNGPS 203

Query: 90  VIRKSKVQLRHKKFTPNDFWLCCFC 16
           V+    VQ    K   N    CC C
Sbjct: 204 VVSSFPVQRPVCKDPCN---CCCPC 225


>AY094970-1|AAM11323.1| 1118|Drosophila melanogaster SD09067p
           protein.
          Length = 1118

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 235 LPASQSIGGHALGSNIRFHFPHLRLFQSRE 146
           L A   +GGHAL  NI+  F HL+    R+
Sbjct: 427 LKADIGVGGHALAQNIKRFFSHLQHLIERD 456


>AJ243904-1|CAB64937.1|  773|Drosophila melanogaster SF1 protein
           protein.
          Length = 773

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 427 RYGPVLPNQSHRITRQLSKLQP-FRHPTDVDPPVLKAAD 314
           RY   L  Q H++  ++  + P F+ P D  PPV + +D
Sbjct: 355 RYRKRLEEQRHQLIVKMQTVNPEFKPPADYKPPVTRVSD 393


>AE014297-4114|AAF56695.2| 1120|Drosophila melanogaster CG3368-PA
           protein.
          Length = 1120

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 235 LPASQSIGGHALGSNIRFHFPHLRLFQSRE 146
           L A   +GGHAL  NI+  F HL+    R+
Sbjct: 429 LKADIGVGGHALAQNIKRFFSHLQHLIERD 458


>AE014297-2366|AAF55430.3|  787|Drosophila melanogaster CG5836-PA
           protein.
          Length = 787

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 427 RYGPVLPNQSHRITRQLSKLQP-FRHPTDVDPPVLKAAD 314
           RY   L  Q H++  ++  + P F+ P D  PPV + +D
Sbjct: 355 RYRKRLEEQRHQLIVKMQTVNPEFKPPADYKPPVTRVSD 393


>AE013599-2291|AAM68500.1|  697|Drosophila melanogaster CG4700-PC,
           isoform C protein.
          Length = 697

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 2/116 (1%)
 Frame = -3

Query: 438 LFGGVMGQCSQINLIG*HASFQNFSHFGIQQMLI--LRC*RQRTSFFFFCEDFVELVHLR 265
           LFG  +   SQI  +    S  +   F   ++          R + +    D V  V+L+
Sbjct: 8   LFGSCLMLISQIEAVTEELSPDHVREFNCGKLYYRTFHMNEDRDTLYVGAMDRVFRVNLQ 67

Query: 264 GKAPASGSHPCLRRNPSEDTLWDPISDSTSHIFACFNHAKMGNWQPLAAVTFVSGT 97
             + ++ +   +   P+ D +   +S   S IF C NH ++          +V GT
Sbjct: 68  NISSSNCNRDVINLEPTRDDVVSCVSKGKSQIFDCKNHVRVIQSMDQGDRLYVCGT 123


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,371,793
Number of Sequences: 53049
Number of extensions: 788121
Number of successful extensions: 2570
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)