Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31053
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14500.1 68415.m01623 F-box family protein contains F-box dom...    32   0.45 
At4g05490.1 68417.m00830 F-box family protein (FBL22) contains s...    30   1.4  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    30   1.4  
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   2.4  
At1g04010.1 68414.m00387 lecithin:cholesterol acyltransferase fa...    29   4.2  
At4g10490.1 68417.m01721 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   7.3  
At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative / cel...    28   7.3  
At3g28345.1 68416.m03541 ABC transporter family protein similar ...    27   9.6  
At2g36110.1 68415.m04434 3'-5' exonuclease domain-containing pro...    27   9.6  

>At2g14500.1 68415.m01623 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 347

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 255 PASGSHPCLRRNPSEDTLWDPISDSTSHIFACFNHAKMGNW 133
           P  G H C+  NP ED ++  + D +  IF     A  GNW
Sbjct: 55  PDEGVHGCVLYNPDEDRIYKSVRDFSGTIFL----ANSGNW 91


>At4g05490.1 68417.m00830 F-box family protein (FBL22) contains
           similarity to N7 protein GI:3273101 from [Medicago
           truncatula]
          Length = 307

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 596 TLGQVTFWTHLLGLRGIHLAVANLLSGLVRLSEISN 703
           TL  V FW+HL       LA+A+ + GL+ L  ISN
Sbjct: 178 TLKLVGFWSHLNESDNDALAIADTMPGLLHLQLISN 213


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 198 DPISDSTSHIFACFNHAKMGNWQPLA 121
           DP + ST+H+  C  HA  GNW+  A
Sbjct: 672 DPFN-STAHVLLCSMHASSGNWENAA 696


>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavanone 3-hydroxylase
           [Persea americana][GI:727410]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 341

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 362 WLKF*KLACYPMRLIWEHWPITPPNRPRNSFAKYGR 469
           W  + +L CYP+      WP  PP+  +   +KY R
Sbjct: 123 WRDYLRLHCYPIHKYVNEWPSNPPSF-KEIVSKYSR 157


>At1g04010.1 68414.m00387 lecithin:cholesterol acyltransferase
           family protein / LACT family protein weak similarity to 
           SP|P40345 Phospholipid:diacylglycerol acyltransferase
           (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae};
           contains Pfam profile PF02450: Lecithin:cholesterol
           acyltransferase (phosphatidylcholine-sterol
           acyltransferase)
          Length = 629

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 548 ASTFVQRMFCIKFSESTLGQVTFWTHLLG 634
           +++F   ++ + FS++  G  TFWTH  G
Sbjct: 264 SNSFASSLWLMPFSKNCKGDNTFWTHFSG 292


>At4g10490.1 68417.m01721 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to naringenin,2-oxoglutarate
           3-dioxygenase [Dianthus caryophyllus][SP|Q05964],
           hyoscyamine 6 beta-hydroxylase [Atropa
           belladonna][gi:4996123]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 348

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 362 WLKF*KLACYPMRLIWEHWPITP 430
           W  F +L CYP+      WP TP
Sbjct: 130 WRDFLRLHCYPIEDFINEWPSTP 152


>At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-1,4-beta-glucanase
           GI:2065530 from [Lycopersicon esculentum]
          Length = 623

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 259 GSRIGIPSLPASQSIGGHALGSNIRFHFP 173
           G++ G+P +      G +  GSN++FHFP
Sbjct: 149 GTKDGLPDVVGGLVGGYYDGGSNVKFHFP 177


>At3g28345.1 68416.m03541 ABC transporter family protein similar to
           P-glycoprotein [Arabidopsis thaliana] GI:3849833;
           contains Pfam profiles PF00005: ABC transporter,
           PF00664: ABC transporter transmembrane region
          Length = 1240

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 528 LHKGHRPPLPSFSACFASNFPNPHWDR*HFGRISLAYVAFIWRSRIYFLVSSV 686
           L + ++P LPSF    A N   P W +  +G IS      I  +  Y L S V
Sbjct: 647 LSEDNKPQLPSFKRLLAMNL--PEWKQALYGCISATLFGAIQPAYAYSLGSMV 697


>At2g36110.1 68415.m04434 3'-5' exonuclease domain-containing
           protein contains Pfam profile PF01612: 3'-5' exonuclease
          Length = 239

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 537 LCVNNRCLVATWQMSEMAHVPRRLPYFANEFLGLFGGVMGQCSQ 406
           LCV NRCL+   Q+S    +P  L  F  +    F GV     Q
Sbjct: 78  LCVGNRCLII--QLSHCKRIPEVLRSFLEDETITFVGVWNSQDQ 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,104,649
Number of Sequences: 28952
Number of extensions: 378412
Number of successful extensions: 1067
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)