Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31052
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602...    32   0.39 
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897...    31   0.52 
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296...    30   1.6  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    27   8.4  
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675...    27   8.4  

>02_05_0435 -
           28958422-28958665,28959328-28959462,28960056-28960211,
           28960287-28961092,28961177-28961254,28961809-28961883,
           28962127-28962215,28962735-28962843,28963007-28963086,
           28963739-28963794,28963876-28963958,28964049-28964118,
           28964200-28964309,28964395-28964548,28965183-28965382,
           28966175-28966348,28969080-28969277,28970564-28970791
          Length = 1014

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +1

Query: 277 ANRPLVQQCRPNQVCCRRPFRPQASYRGQCGVRHSQGINGRISTPGYVYWESEFWGIPL- 453
           A   L+ +CR      RRP RP   YRG   +  S  I       G VY  +    IPL 
Sbjct: 46  ATAALIPRCRSTAALARRPLRPPPLYRGSPALGDSFHI-------GIVYCLTFCRAIPLP 98

Query: 454 ASSYS*GRPPRVSLRLLWT 510
               S   P  VSLR  WT
Sbjct: 99  LVRLSGENPVLVSLRSGWT 117


>03_05_0172 -
           21488504-21488752,21488862-21489611,21489691-21489789,
           21489862-21490776,21490847-21490976,21491438-21491583,
           21491801-21491896,21492521-21492613,21492702-21492755,
           21492897-21492956,21493046-21493171,21493283-21493366,
           21493444-21493587,21493667-21493963
          Length = 1080

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 59  RDDLYLPIDPRNKGSEIVALTEEQLDNITNIE--ITQMTN-TENSTNDDVKKISKRDVKE 229
           +DD+        + +E+ AL EEQ D I  +   + Q    +E++ N D  + +K  V E
Sbjct: 715 KDDITASTIASKRQTELEALCEEQADKIKELSNLVDQYKKCSEDAQNSDGTEPTKELVDE 774

Query: 230 DKPQEQPKELN 262
            K  EQ  ELN
Sbjct: 775 AKVGEQHGELN 785


>02_05_0583 +
           30128795-30129158,30129342-30129505,30129602-30129665,
           30130082-30130215,30130369-30130452,30130580-30130654,
           30130734-30130805,30130892-30130965,30131217-30131269,
           30131388-30131497,30131824-30131892,30131975-30132049,
           30132449-30132508,30132555-30132647,30132718-30132797,
           30132877-30132976,30133153-30133590
          Length = 702

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +2

Query: 131 LDNITNIEITQMTNT----ENSTNDDVKKISKRDVKEDKPQEQPKELNRVKDMQTVH 289
           +D     ++ +++NT      S+N   + I K D   D PQ+QP +  + KD++T +
Sbjct: 550 MDGFFVAKLKKLSNTIPVASESSNVPEEAIEKADPSSDDPQKQPIQSKKHKDVKTTN 606


>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
            4521632-4521723,4522226-4522342,4522641-4522704,
            4523175-4523228,4523579-4523666,4523788-4524023,
            4525258-4525478,4525634-4525827,4525938-4525995,
            4526771-4526824,4526851-4527473,4527580-4527640,
            4528417-4528590,4528803-4529063,4529201-4529320,
            4529388-4530022,4530062-4530828,4530915-4531012,
            4531101-4531155,4531230-4531318
          Length = 2010

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 437  NSLSQ*T*PGVEILPLIPCECLTPHWPR*LA*GLNG 330
            ++LSQ   PGV ++PL  C+ +TP+ P  L+ G +G
Sbjct: 1341 HALSQACAPGVILMPLDLCDAMTPN-PDALSIGYSG 1375


>05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,
            6759967-6760077,6760562-6760663,6761139-6761366,
            6761568-6761696,6761753-6761869,6761955-6762301,
            6762377-6762931,6763104-6763182,6763429-6763595,
            6763857-6764075,6764956-6765139,6765175-6765371,
            6765717-6766035,6766379-6766538,6767642-6767794,
            6767911-6768013
          Length = 1226

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +2

Query: 44   EIIGRRDDLYLPIDPRNKGSEIVALTEEQLDNITNIEITQMTNTENSTNDDVKKISKRDV 223
            E I  +D+L+  ++  N      A   E LD+    E+  + NTE    DD+      D+
Sbjct: 1145 ETISSKDNLHHGLNSSNNSGG--AGETELLDDFIEPELDNVENTEQRVIDDINITESGDM 1202

Query: 224  KEDKPQEQP 250
            +     ++P
Sbjct: 1203 ESSFADQKP 1211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,151,042
Number of Sequences: 37544
Number of extensions: 341759
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)