Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31052
(587 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 33 0.17
SB_12307| Best HMM Match : Death (HMM E-Value=0.00097) 32 0.30
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_51108| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_48008| Best HMM Match : M (HMM E-Value=0.0068) 30 1.6
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09) 28 6.5
SB_9082| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032) 28 6.5
SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43) 28 6.5
SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8) 27 8.6
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30) 27 8.6
SB_30129| Best HMM Match : Y_phosphatase (HMM E-Value=6.7e-13) 27 8.6
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 27 8.6
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 110 VALTEEQLDNITNIEITQMTNTENSTNDDVKKISKRDVKEDKPQEQPKELNRVKDMQT 283
V + E +D E T + + E +D + I K+D D+ ++ KE ++ ++M+T
Sbjct: 1623 VEKSPESVDKTEGHERTDVEDDEKKADDSNEDIGKKDESRDQAEDAKKEESKTEEMET 1680
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 110 VALTEEQLDNITNIEITQMTNTENSTNDDVKKISKRDVKEDKPQEQPKELNRVKDMQT 283
V + E +D E T + + E +D + I K+D D+ ++ KE ++ ++M+T
Sbjct: 202 VEKSPESVDKTEGHERTDVEDDEKKADDSNEDIGKKDESRDQAEDAKKEESKTEEMET 259
>SB_12307| Best HMM Match : Death (HMM E-Value=0.00097)
Length = 1366
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +2
Query: 56 RRDDLYLPIDPRNKGSEIVALTEEQLDNITNIEITQMTNTENSTNDDVKKISKR--DVKE 229
++ D+ L + R+ G+ +V +++ + N ++ N+E S DDV +SK+ DV +
Sbjct: 219 KKADVDLLREIRDVGNVVVQSVSKEIQDSKNSVSKEIQNSEKSVRDDVHGVSKQVNDVSQ 278
Query: 230 DKPQEQPKELNRVKDMQT 283
QE + ++ D+ T
Sbjct: 279 TFHQEFKEMHQKLDDVTT 296
>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/59 (30%), Positives = 35/59 (59%)
Frame = +2
Query: 110 VALTEEQLDNITNIEITQMTNTENSTNDDVKKISKRDVKEDKPQEQPKELNRVKDMQTV 286
V+ E QL+ +E+ ++ + + ND +K I K++V++ P E+ RVK+++TV
Sbjct: 585 VSNLEHQLEK-NRMEVQALSEQQQALNDQIKHI-KQEVEKTTPDEK-----RVKELETV 636
>SB_51108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +2
Query: 26 DQCPSQEIIGRRD--DLYLPIDPRNKGSEIVALTEEQLD----NITNIEITQMTNTENST 187
D C + E+ G ++YL DP KG V L ++ N ++EI +M N+E +
Sbjct: 73 DSCTADEVNGFSGLKEVYLKADPNFKGKISVPLLWDKKTGTAVNNDSVEIMRMLNSEFNA 132
Query: 188 NDDVKKISKRDVKEDKPQEQPKELN 262
K+ D++ Q++ +++N
Sbjct: 133 FCPTKEQRSIDLRPSDLQDKMEDIN 157
>SB_48008| Best HMM Match : M (HMM E-Value=0.0068)
Length = 1068
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +2
Query: 128 QLDNIT--NIEIT-QMTNTENSTNDDVKKISKRDVKEDKPQEQPKELNRV 268
Q+D +T N E+ ++TN N T+ + ++ +R+ K ++ QE+ K L +
Sbjct: 274 QIDQLTGRNEELRHELTNARNETSKALVQVERRETKIEQLQEEVKALKEI 323
>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 237 LRNNLKN*TASRICKPSISATMPAKSGVLPSTI 335
LRN+ N TAS +C+ + S + K VL S I
Sbjct: 696 LRNDQSNPTASHLCEANFSLKLNGKRRVLKSAI 728
>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
Length = 441
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 260 NRVKDMQTVH*CNNAGQIRCAAVDHLDLKQVTVASVELDIHKGLTGGSQHL 412
NRV Q VH ++ + + + QV ++SV D H+ LT + L
Sbjct: 324 NRVVHNQPVHKLSHNSSTKSPGAQYKKILQVVMSSVVEDFHQNLTSTIERL 374
>SB_9082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 35 PSQEIIGRRDDLYLPIDPRNKGSEIVALTE 124
PS +IG Y PI P S ++ LTE
Sbjct: 74 PSYSLIGHHQPSYSPIYPHQPSSTLIMLTE 103
>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
Length = 1199
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +2
Query: 122 EEQLDNITNIEITQMTNTENSTNDDVKKISKRDVKEDKPQEQPKELNRV 268
E +++ T T+ T + DDV+K K D + P+ P E +R+
Sbjct: 487 EGKVEKKTETSKTKKRKTMDDLTDDVRKTDKTDGETKTPKTLPSEDSRL 535
>SB_10214| Best HMM Match : VWA (HMM E-Value=1.30321e-43)
Length = 821
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 296 NNAGQIRCAAVDHLDLKQVTVASVELDIHKGLTGGSQHLATFIGK 430
NN A+D++D+ VT+A + + K LT G Q A++I +
Sbjct: 153 NNGRVHNLKAIDNVDIASVTIAPLSTE-SKHLTTGPQLTASYINE 196
>SB_48633| Best HMM Match : GT36_AF (HMM E-Value=3.8)
Length = 571
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 236 PQEQPKELNRVKDMQTVH*CNNAGQIRCAAVDHLDLK 346
P E+P +LN ++ +H N I AA+ + D+K
Sbjct: 275 PGEKPMDLNELQLKVAIHPTENKPMIAMAAIKYSDIK 311
>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
Length = 824
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 149 IEITQMTNTENSTNDDVKKISKRDVKEDK--PQEQPKELNRVK 271
I+ T M N +N ++ D +++ Q PKELNRVK
Sbjct: 576 IKDTGMCNLAEESNGSESNATQEDSEDEDCLQQNSPKELNRVK 618
>SB_30129| Best HMM Match : Y_phosphatase (HMM E-Value=6.7e-13)
Length = 139
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 86 PRNKGSEIVALTEEQLDNITNIEITQMTNTENSTNDDVKKISKRDVKEDKPQE 244
P GS +V + ++ + I ++TNTE S + DV++ E+ P E
Sbjct: 10 PITFGSLVVEMQDKVKSGHLVVRIFKLTNTEVSASRDVRQFHYTSWTEENPLE 62
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 143 TNIEITQMTNTENSTNDDVK---KISKRDVKEDKPQEQPKE 256
T++E + T + S K +IS +D EDKP+++P+E
Sbjct: 276 TSLETSLKTRLKTSLKTSPKTSPEISPKDKLEDKPEDRPEE 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,472,134
Number of Sequences: 59808
Number of extensions: 384693
Number of successful extensions: 1443
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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