Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31052
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY) domain-c...    31   0.75 
At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY) domain-c...    31   0.75 
At5g05990.1 68418.m00664 mitochondrial glycoprotein family prote...    30   1.3  
At4g22320.1 68417.m03227 expressed protein                             30   1.3  
At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2...    29   1.7  
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    29   2.3  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    29   3.0  
At4g28080.1 68417.m04027 expressed protein                             28   4.0  
At1g70630.1 68414.m08141 expressed protein                             28   4.0  
At3g54670.1 68416.m06049 structural maintenance of chromosomes (...    28   5.3  
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin...    27   7.0  
At3g47420.1 68416.m05156 glycerol-3-phosphate transporter, putat...    27   7.0  
At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger) fa...    27   7.0  
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea...    27   9.3  

>At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY)
           domain-containing protein similar to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 467

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 191 DDVKKISKRDVKEDKPQEQPKELNRV 268
           D ++  +KRD KED+ +E P ELN +
Sbjct: 31  DKIRLSAKRDAKEDEGEELPTELNTI 56


>At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY)
           domain-containing protein similar to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 465

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 191 DDVKKISKRDVKEDKPQEQPKELNRV 268
           D ++  +KRD KED+ +E P ELN +
Sbjct: 31  DKIRLSAKRDAKEDEGEELPTELNTI 56


>At5g05990.1 68418.m00664 mitochondrial glycoprotein family protein
           / MAM33 family protein low similarity to SUAPRGA1
           [Emericella nidulans] GI:6562379; contains Pfam profile
           PF02330: Mitochondrial glycoprotein
          Length = 259

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = +2

Query: 77  PIDPRNK-GSEIVALTEEQLDNITNIEITQMTN-----TENSTNDDVKKISKRDVKEDKP 238
           P +  +K G +IV LT E       +E+  MTN      E+  +D+ +  ++ D  EDKP
Sbjct: 90  PFEMEDKPGGKIVTLTREYEGETVKVEV-HMTNLVTGDKEDDEDDEEEAENEEDEDEDKP 148

Query: 239 QEQPKELN 262
             +PK+ N
Sbjct: 149 L-KPKQSN 155


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 86  PRNKGSEI-VALTEEQLDNITNIEITQMTNTENSTNDDVKKISKRDVKEDKPQEQPKE 256
           PR +   + +A+ EEQ   IT IE       ++  ++D K   +  V EDK  E+  E
Sbjct: 110 PRRRFKYVPIAVLEEQKKEITEIEEDDKIEEDDKIDEDNKVEQEDKVDEDKTVEESSE 167


>At2g24720.1 68415.m02953 glutamate receptor family protein (GLR2.2)
           plant glutamate receptor family, PMID:11379626
          Length = 920

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 353 TVASVELDIHKGLTGGSQHLATFIGKVNFGGYPWQAAI 466
           T+ S+   +H+G T G Q  +  +GK+N  G+P  + +
Sbjct: 675 TITSMSSLLHRGETVGYQRTSFILGKLNETGFPQSSLV 712


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 35  PSQEI--IGRRDDLYLPIDPRNKGSEIVALTEEQLDN--ITNIEITQMTNTENSTNDDVK 202
           P QE+  I    D+    D  + G+EI  + E  + +  +   + ++  ++EN   D   
Sbjct: 395 PLQELPWIPEHCDISKGDDLSSSGNEIGPVAEPNISSGKVVFNQTSKTQSSENKREDKEP 454

Query: 203 KISKRDVKEDKPQEQPK 253
            IS   + + KP E+PK
Sbjct: 455 NISLMSLSKSKPNEEPK 471


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
            ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 95   KGSEIVALTEEQLDNITNIEITQMTNTENSTNDDVKKISKRDVKEDKPQEQPKE 256
            K  E +   E  +    N+E+      ++  +DD ++  + D +ED P+E P+E
Sbjct: 1132 KTKETLGSKEVTVGEAVNMEVENQDEEDDDGDDDPEEDPEEDPEED-PEEDPEE 1184


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 176  ENSTNDDVKKISKRDVKEDKPQEQPKELNRVKDMQTVH 289
            ++ T  + KK+   D+++ KPQ+Q   L  VK   TVH
Sbjct: 1046 KSETKSEEKKVENFDLEQSKPQDQ---LKLVKPEATVH 1080


>At1g70630.1 68414.m08141 expressed protein
          Length = 537

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 213 KEMSKKISLRNNLKN*TASRICKPSISATMPAKSGVLP 326
           +E+ K ISLR+   N +AS++     +  MP   GVLP
Sbjct: 74  RELQKMISLRSLQSNSSASKMIMAWNNIDMPLHCGVLP 111


>At3g54670.1 68416.m06049 structural maintenance of chromosomes
           (SMC) family protein similar to SMC1 protein [Bos
           taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
           protein) [Xenopus laevis] GI:3328231; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1257

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
 Frame = +2

Query: 122 EEQLDNITNIEITQMTNTENS-------TNDDVKKISKRDVKEDKPQEQPKELNRVKDMQ 280
           E+QL+NI +I   QM  +E S             +I K+ +K+  PQ + +E N ++++ 
Sbjct: 707 EQQLENIGSIREMQMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEID 766

Query: 281 TV 286
            +
Sbjct: 767 RI 768


>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
           protein similar to farnesylated protein ATFP3
           [GI:4097547]; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 283

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +2

Query: 80  IDPRNKGSEIVALTEEQLDNITNIEITQMTNTENSTNDDVKKISKRDVKEDKPQEQPKE 256
           +DP     ++   T++++D ++     +      + ND+ KK S+   K D   ++PKE
Sbjct: 71  LDPVKLREKLEEKTKKKVDLVSPQPKKEKEKENKNKNDEDKKKSEEKKKPDNNDKKPKE 129


>At3g47420.1 68416.m05156 glycerol-3-phosphate transporter, putative
           / glycerol 3-phosphate permease, putative similar to
           cAMP inducible 2 protein [Mus musculus] GI:4580997,
           glycerol-3-phosphate transporter (glycerol 3-phosphate
           permease) [Homo sapiens] GI:7543982; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 523

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 47  IIGRRDDLYLPIDPRNKGSEIVALTEEQLDNITN-IEITQMTNTENSTNDDVKK 205
           +IG  +  +LP+ P N G+E   + +   + I N +    + ++ +S  DD K+
Sbjct: 237 VIGLVNYAFLPVSPENVGAERDEVLDSSSEKIGNSVNEPLLLSSSDSETDDKKR 290


>At2g45530.1 68415.m05662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 240

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 164 MTNTENSTNDDVKKISKRDVKEDKPQEQPKELNRVKDMQTVH*CN 298
           M ++ +S  DD++K  ++  K+  PQ+Q +  N    + T+  CN
Sbjct: 1   MQSSSSSGGDDLEKQQQQQQKDKSPQKQSESANESNHL-TIVVCN 44


>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, muscle
           (Swiss-Prot:P05661) [Drosophila melanogaster]
          Length = 468

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 122 EEQLDNITNIEITQMTNTE-NSTNDDVKKISKRDVKEDKPQEQPKELNRVKDM 277
           EEQ  N  N+ + +    E +    ++K++ +R    D+P  + KE   VKD+
Sbjct: 176 EEQ--NTANMSLVRALKMELDECRAEIKEVQQRKKLSDRPLRKKKEEEEVKDV 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,528
Number of Sequences: 28952
Number of extensions: 267123
Number of successful extensions: 766
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)