Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31050
         (547 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   2.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   5.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   5.3  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.0  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   7.0  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 200 IALSRLIRA-PLRRPNVWLSARSCSTTD 280
           + L  L+R  P R  ++W+  + C+TTD
Sbjct: 264 VLLDELLRHFPERIQSLWVLEKICTTTD 291


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 RPGQVF*KISSVLTSCR 327
           +PG +F K+ SVLT  R
Sbjct: 499 KPGTIFAKLLSVLTELR 515


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 128 SSSCVMFFFISLYSWNSFSKAAAWNRQW 45
           SS  + F ++S  SW  +   A    QW
Sbjct: 579 SSIPIYFKWLSFLSWFRYGNGALMINQW 606


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 128 SSSCVMFFFISLYSWNSFSKAAAWNRQW 45
           SS  + F ++S  SW  +   A    QW
Sbjct: 579 SSIPIYFKWLSFLSWFRYGNGALMINQW 606


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 248 KRWAFSTGLL 219
           + W+FSTGLL
Sbjct: 160 QEWSFSTGLL 169


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 248 KRWAFSTGLL 219
           + W+FSTGLL
Sbjct: 178 QEWSFSTGLL 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,334
Number of Sequences: 336
Number of extensions: 2611
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13411456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)