Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31050
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    60   2e-10
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    27   1.8  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   4.2  
SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase |Schizosac...    25   9.6  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.6  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   9.6  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    25   9.6  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)
 Frame = +3

Query: 255 LLGLAQPPTRASLLKDIVRLNVVSLASPQLQQLYSWLEVEFDPLTICINVKGVIKSLQDE 434
           LL L++ PTR +L+KD +   V+S     ++ LY  LEVEF PL+IC  ++ +IK L + 
Sbjct: 351 LLNLSKTPTRETLIKDAISRGVLSFCDQAIRDLYQILEVEFHPLSICKKLQPIIKRLAE- 409

Query: 435 PNSSLAQYTNALKDVAL 485
            ++  AQY   L+ V L
Sbjct: 410 -SNDTAQYIRPLQQVIL 425



 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 4   NYYGKLALVFWKAGHCLFHAAALLKLF 84
           NYY KL  +F    + L HAAA  + F
Sbjct: 276 NYYRKLIKIFLVCDNYLLHAAAWNRYF 302


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   PTTMGNWHLFSGKLATAYSMLQ 67
           PT   +WHLFS  LA  YS+L+
Sbjct: 167 PTNKNHWHLFS-DLADDYSLLE 187


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 6/33 (18%), Positives = 18/33 (54%)
 Frame = -3

Query: 116 VMFFFISLYSWNSFSKAAAWNRQWPAFQKTSAS 18
           ++ ++I ++ W  F +   W+ +W  +  T+ +
Sbjct: 286 LVVYWIGIFIWIGFGRMLGWSDEWQLYINTAVA 318


>SPBC409.13 |||6,7-dimethyl-8-ribityllumazine synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 159

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 329 QRHDVKTDDIFQKTCPGRW 273
           ++HDVK ++I  ++ PG W
Sbjct: 45  EKHDVKLENIDIESVPGSW 63


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 173 HCHLYTLSSIALSRLIRAP 229
           +CH+Y LSS+ +  LI  P
Sbjct: 669 NCHVYQLSSLPVHSLITGP 687


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +3

Query: 48  LPIPCCSLTETVPAIQGDEEE---HHTRGTAEDGVSST 152
           +P PC S    +PA+ G  +    HH  G  ++  S+T
Sbjct: 625 VPSPCISTNPNLPALVGSLDSVNLHHLLGFIQNTYSTT 662


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 45  PLPIPCCSLTETVPAIQGDEEEHHTRGTAEDGVSSTGS 158
           P P P  S++ T P + G   E+ T  ++ + +  T S
Sbjct: 351 PSPAPTLSVSGTTPGMTGSTSEYVTPVSSVNSMRETAS 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,250,182
Number of Sequences: 5004
Number of extensions: 42284
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)