BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS31050 (547 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 47 1e-05 03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451... 29 3.2 02_02_0577 - 11736474-11736609,11736756-11737003,11738002-117380... 28 5.6 01_06_1414 + 37167849-37168820,37168909-37168980,37169104-371691... 27 7.4 06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 27 9.8 >01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491, 1171148-1171398,1171442-1171687,1172220-1172415, 1172796-1172876,1172966-1173169,1173671-1173880, 1173953-1174174,1174437-1174480,1174974-1175052, 1175066-1175227,1175337-1175564,1175786-1175815, 1175905-1176273,1176356-1176571,1177202-1177683, 1177930-1177975 Length = 1352 Score = 46.8 bits (106), Expect = 1e-05 Identities = 21/45 (46%), Positives = 30/45 (66%) Frame = +1 Query: 7 YYGKLALVFWKAGHCLFHAAALLKLFQLYREMKKNITQEELQKMA 141 YY KL +FW + L+HA A LKLF L + KN++Q++LQ +A Sbjct: 276 YYAKLTEIFWISDCHLYHAYAWLKLFYLQKSYNKNLSQKDLQLIA 320 Score = 34.3 bits (75), Expect = 0.064 Identities = 15/50 (30%), Positives = 29/50 (58%) Frame = +3 Query: 276 PTRASLLKDIVRLNVVSLASPQLQQLYSWLEVEFDPLTICINVKGVIKSL 425 P+RASL ++ V++ AS ++ LY+ LE +F PL + + ++ + Sbjct: 372 PSRASLFSELAAKGVIACASQDVKDLYNLLEHDFLPLDLVSKAQPLLSKI 421 >03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768, 4517084-4517123,4517259-4517305,4517464-4517584, 4517931-4518091 Length = 234 Score = 28.7 bits (61), Expect = 3.2 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -1 Query: 286 ALVGG*ARPSR--QPNVGPSQRGSYQSRQSDRAQ 191 ++VG + PS NVGP QR S S+ S RAQ Sbjct: 33 SVVGSSSHPSTPSSSNVGPHQRASDNSQSSSRAQ 66 >02_02_0577 - 11736474-11736609,11736756-11737003,11738002-11738087, 11738557-11738633,11738813-11738846,11739922-11740037, 11740121-11740659 Length = 411 Score = 27.9 bits (59), Expect = 5.6 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = +1 Query: 10 YGKLALVFWKAGHCLFH--AAALLKLFQLYREMKKNIT 117 +GK+ F A HCL H +A + QL+ ++K+ IT Sbjct: 239 FGKILSCFTMAFHCLAHEIVSASCMVVQLFGDIKEEIT 276 >01_06_1414 + 37167849-37168820,37168909-37168980,37169104-37169133, 37169276-37169368 Length = 388 Score = 27.5 bits (58), Expect = 7.4 Identities = 16/52 (30%), Positives = 22/52 (42%) Frame = +3 Query: 18 TGTCFLESWPLPIPCCSLTETVPAIQGDEEEHHTRGTAEDGVSSTGSGAVCA 173 +G C S+ LP+P C T + ++ HT A GSG V A Sbjct: 111 SGLCRQGSFSLPLPLCQKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAA 162 >06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104, 25541673-25541751,25542151-25542238,25542330-25542600, 25542676-25542718,25542801-25542904,25543374-25543790 Length = 2068 Score = 27.1 bits (57), Expect = 9.8 Identities = 20/64 (31%), Positives = 27/64 (42%) Frame = +3 Query: 336 PQLQQLYSWLEVEFDPLTICINVKGVIKSLQDEPNSSLAQYTNALKDVALVMTDPSGGPM 515 PQLQQL W E E + G + L+ P+ + A+ D + T SG P Sbjct: 164 PQLQQLLPWEEAEEERR----RYGGATQQLRLSPSGPRKRQRCAVHDADVESTSSSGPPP 219 Query: 516 LRVR 527 R R Sbjct: 220 RRQR 223 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,082,052 Number of Sequences: 37544 Number of extensions: 326783 Number of successful extensions: 1011 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1011 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1222086348 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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