Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31050
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    47   1e-05
03_01_0614 + 4515515-4515540,4515988-4516209,4516681-4516768,451...    29   3.2  
02_02_0577 - 11736474-11736609,11736756-11737003,11738002-117380...    28   5.6  
01_06_1414 + 37167849-37168820,37168909-37168980,37169104-371691...    27   7.4  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    27   9.8  

>01_01_0128 -
           1167904-1168749,1168790-1168863,1169419-1169491,
           1171148-1171398,1171442-1171687,1172220-1172415,
           1172796-1172876,1172966-1173169,1173671-1173880,
           1173953-1174174,1174437-1174480,1174974-1175052,
           1175066-1175227,1175337-1175564,1175786-1175815,
           1175905-1176273,1176356-1176571,1177202-1177683,
           1177930-1177975
          Length = 1352

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/45 (46%), Positives = 30/45 (66%)
 Frame = +1

Query: 7   YYGKLALVFWKAGHCLFHAAALLKLFQLYREMKKNITQEELQKMA 141
           YY KL  +FW +   L+HA A LKLF L +   KN++Q++LQ +A
Sbjct: 276 YYAKLTEIFWISDCHLYHAYAWLKLFYLQKSYNKNLSQKDLQLIA 320



 Score = 34.3 bits (75), Expect = 0.064
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +3

Query: 276 PTRASLLKDIVRLNVVSLASPQLQQLYSWLEVEFDPLTICINVKGVIKSL 425
           P+RASL  ++    V++ AS  ++ LY+ LE +F PL +    + ++  +
Sbjct: 372 PSRASLFSELAAKGVIACASQDVKDLYNLLEHDFLPLDLVSKAQPLLSKI 421


>03_01_0614 +
           4515515-4515540,4515988-4516209,4516681-4516768,
           4517084-4517123,4517259-4517305,4517464-4517584,
           4517931-4518091
          Length = 234

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 286 ALVGG*ARPSR--QPNVGPSQRGSYQSRQSDRAQ 191
           ++VG  + PS     NVGP QR S  S+ S RAQ
Sbjct: 33  SVVGSSSHPSTPSSSNVGPHQRASDNSQSSSRAQ 66


>02_02_0577 -
           11736474-11736609,11736756-11737003,11738002-11738087,
           11738557-11738633,11738813-11738846,11739922-11740037,
           11740121-11740659
          Length = 411

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 10  YGKLALVFWKAGHCLFH--AAALLKLFQLYREMKKNIT 117
           +GK+   F  A HCL H   +A   + QL+ ++K+ IT
Sbjct: 239 FGKILSCFTMAFHCLAHEIVSASCMVVQLFGDIKEEIT 276


>01_06_1414 +
           37167849-37168820,37168909-37168980,37169104-37169133,
           37169276-37169368
          Length = 388

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 18  TGTCFLESWPLPIPCCSLTETVPAIQGDEEEHHTRGTAEDGVSSTGSGAVCA 173
           +G C   S+ LP+P C  T      + ++   HT   A       GSG V A
Sbjct: 111 SGLCRQGSFSLPLPLCQKTVEEVWTEINQAPAHTSAPASALQPHAGSGGVAA 162


>06_03_0867 +
           25534760-25539620,25540662-25540857,25540957-25541104,
           25541673-25541751,25542151-25542238,25542330-25542600,
           25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/64 (31%), Positives = 27/64 (42%)
 Frame = +3

Query: 336 PQLQQLYSWLEVEFDPLTICINVKGVIKSLQDEPNSSLAQYTNALKDVALVMTDPSGGPM 515
           PQLQQL  W E E +         G  + L+  P+    +   A+ D  +  T  SG P 
Sbjct: 164 PQLQQLLPWEEAEEERR----RYGGATQQLRLSPSGPRKRQRCAVHDADVESTSSSGPPP 219

Query: 516 LRVR 527
            R R
Sbjct: 220 RRQR 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,052
Number of Sequences: 37544
Number of extensions: 326783
Number of successful extensions: 1011
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)