Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31050
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 71 8e-13
SB_27921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_76| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_9929| Best HMM Match : MTS (HMM E-Value=3.5) 28 5.7
SB_54343| Best HMM Match : TipAS (HMM E-Value=0.77) 28 5.7
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6) 28 5.7
SB_571| Best HMM Match : Herpes_US9 (HMM E-Value=0.9) 28 5.7
SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0) 27 7.6
SB_563| Best HMM Match : Ank (HMM E-Value=0) 27 7.6
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 70.5 bits (165), Expect = 8e-13
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +1
Query: 1 ANYYGKLALVFWKAGHCLFHAAALLKLFQLYREMKKNITQEELQKMACQXXXXXXXXXXX 180
ANYY K+ALVF KAG+ L+HA +L+ L RE KK+IT EELQKMA
Sbjct: 265 ANYYQKVALVFLKAGNFLYHACTQQRLYLLMREQKKSITSEELQKMASHVLLATLSVPIQ 324
Query: 181 XXHPELDRFVETDKSPVEKAQRLA 252
++++E D+ EK++RLA
Sbjct: 325 VSLSNTEKYLELDEVAREKSKRLA 348
>SB_27921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = +3
Query: 12 WETGTCFLESWPLPIPCCS------LTETVPAIQGDEEEHHTRGTAE 134
WET C WP+ PCC+ L + V + ++ HT GT+E
Sbjct: 193 WET--CSTAHWPIHDPCCNAQLNQDLLDAVSEPLQETKQDHTPGTSE 237
>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1444
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 417 KSLQDEPNSSLAQYTNALKDVALVMTDPSGGPML 518
KS E NSSL Q ALK +A + GGP L
Sbjct: 597 KSALGELNSSLQQENKALKQLATSLQKGPGGPSL 630
>SB_76| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = +3
Query: 396 INVKGVIKSLQDEPNSSLAQYTNALKDVALVMTDPSGGPML 518
+N K V KSL DEP N LKDV T +G P+L
Sbjct: 258 VNFKSVYKSLSDEPMEVDNLKVNPLKDV----TVENGAPVL 294
>SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)
Length = 573
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 33 LESWPLPIPCCSLTETVPAIQGDEEEHHTRGTA 131
LE WP I C ++ + +P G+ + R T+
Sbjct: 416 LEDWPQTIACPAIPQVIPFSDGETRKRKARKTS 448
>SB_54343| Best HMM Match : TipAS (HMM E-Value=0.77)
Length = 316
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -2
Query: 516 ALGHLTDQSSPGPRPSAHWCTERAMNLAHPA 424
A G T + SP P C R +NL +PA
Sbjct: 110 ATGRATAKQSPDPMSGPKQCLSRMINLTYPA 140
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 375 FDPLTI-CINVKGVIKSLQDEPNSSL 449
FDP T+ C+N+ +IK QD+ N +L
Sbjct: 62 FDPFTLQCVNLPQLIKQHQDKHNQTL 87
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 375 FDPLTI-CINVKGVIKSLQDEPNSSLAQYTNALKDVALVMT 494
FDP T+ C+N+ IK QD+ N +L VA++ T
Sbjct: 731 FDPFTLQCVNLPQPIKQHQDKHNQTLLSLLGENCTVAMLNT 771
>SB_15303| Best HMM Match : Orexin_rec2 (HMM E-Value=6)
Length = 421
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 137 IFCSSSCVMFFFISLYSWNSFSKAAAWNRQW 45
+F ++C + I++Y WN+F + A +++W
Sbjct: 23 VFAVAACALC--ITVYEWNTFKQVTAESKRW 51
>SB_571| Best HMM Match : Herpes_US9 (HMM E-Value=0.9)
Length = 273
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 45 PLPIPCCSLTETVPAIQGDEEEHHTRGTA 131
PLP C T T PA G + + HT TA
Sbjct: 145 PLPSVCPPQTPTAPASTGGDAQTHTTPTA 173
>SB_13139| Best HMM Match : Peptidase_S28 (HMM E-Value=0)
Length = 563
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 384 LTICINVKGVI---KSLQDEPNSSLAQYTNALKDVALVMTDPSGGPMLR 521
+T+CI G++ + +Q + S Y N +K V DP G M+R
Sbjct: 393 ITLCIVTVGIVVVSQQIQKTASCSDFSYENFMKTVKTQKRDPDGFDMIR 441
>SB_563| Best HMM Match : Ank (HMM E-Value=0)
Length = 753
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 531 LHARVALGHLTDQSSPGPRPSAHWCTERAMNLAH 430
LH V GHL ++ + G CTE A +AH
Sbjct: 103 LHYAVRYGHLKERDTSGGTALHSACTEGATEVAH 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,658,791
Number of Sequences: 59808
Number of extensions: 344652
Number of successful extensions: 922
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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