Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31050
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying defe...    71   4e-13
Z46787-15|CAO78702.1|  829|Caenorhabditis elegans Hypothetical p...    32   0.23 
Z35596-1|CAO78712.1|  829|Caenorhabditis elegans Hypothetical pr...    32   0.23 
Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical p...    27   8.8  

>L23650-1|AAA27955.1| 1076|Caenorhabditis elegans Egg laying
           defective protein 45 protein.
          Length = 1076

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 31/46 (67%), Positives = 39/46 (84%)
 Frame = +1

Query: 4   NYYGKLALVFWKAGHCLFHAAALLKLFQLYREMKKNITQEELQKMA 141
           NYY KLALVFWKAG+ LFHAAALL+ F +Y++MKK+ TQ+E Q+ A
Sbjct: 283 NYYDKLALVFWKAGNSLFHAAALLQKFIIYKDMKKSFTQDEAQEQA 328



 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 26/78 (33%), Positives = 40/78 (51%)
 Frame = +3

Query: 255 LLGLAQPPTRASLLKDIVRLNVVSLASPQLQQLYSWLEVEFDPLTICINVKGVIKSLQDE 434
           LL L   PT+  +LK+  R+ V   A    + LY  LE  F PL +  +V+ V+ ++   
Sbjct: 368 LLRLPIAPTKNGILKEAARIGVPEAAGQTAKDLYKLLESNFSPLKVAKDVQSVLDTV-TR 426

Query: 435 PNSSLAQYTNALKDVALV 488
           P+    QY  +L+ VA V
Sbjct: 427 PDH--LQYVESLQAVAAV 442


>Z46787-15|CAO78702.1|  829|Caenorhabditis elegans Hypothetical
           protein C30D11.1a protein.
          Length = 829

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +3

Query: 66  SLTETVPAIQGDEEEHHTRGTAEDGVSSTGSG 161
           SLT T PA       HH+R T   GVS TG G
Sbjct: 22  SLTFTPPATLVPPTHHHSRSTNRGGVSGTGGG 53


>Z35596-1|CAO78712.1|  829|Caenorhabditis elegans Hypothetical
           protein C30D11.1a protein.
          Length = 829

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +3

Query: 66  SLTETVPAIQGDEEEHHTRGTAEDGVSSTGSG 161
           SLT T PA       HH+R T   GVS TG G
Sbjct: 22  SLTFTPPATLVPPTHHHSRSTNRGGVSGTGGG 53


>Z66512-9|CAA91328.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 143 HAIFCSSSCVMFFFISLYSWNSFSKAAA 60
           H  F  ++CVMF  ISL  ++ F+K  A
Sbjct: 62  HISFMITTCVMFLVISLVYFSIFTKKCA 89


>Z48638-12|CAA88573.3|  253|Caenorhabditis elegans Hypothetical
           protein ZK892.5 protein.
          Length = 253

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 143 HAIFCSSSCVMFFFISLYSWNSFSKAAA 60
           H  F  ++CVMF  ISL  ++ F+K  A
Sbjct: 62  HISFMITTCVMFLVISLVYFSIFTKKCA 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,772,353
Number of Sequences: 27780
Number of extensions: 246988
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)