Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31050
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 28  VFWKAGHCLFHAAALLKLFQLY 93
           V WKAG  +    A  ++F LY
Sbjct: 102 VSWKAGDVMCRIMAFFRMFGLY 123


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 298 FKRLALVGG*ARPSRQPNVGPSQRGSYQSRQSDRAQGVEMA-VAQTA 161
           FK L      AR +R+PN+G  + GS     +    G  +A  A+TA
Sbjct: 367 FKALRNRARKARANRKPNLGDIKPGSIIENIAHTRSGYSVARFAETA 413


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 324 SLASPQLQQLYSWLEVEF 377
           S A  +L+ +YSW  +EF
Sbjct: 18  SQAQEKLKNIYSWKALEF 35


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 240 GLLNGALISLDKAIELRV 187
           G + G + SLD A++LR+
Sbjct: 54  GAITGLVASLDGALKLRI 71


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 429 DEPNSSLAQYTNALKDVALVM 491
           +EPN  +A Y N  +D    M
Sbjct: 319 EEPNDEVATYDNTPRDFPYYM 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,255
Number of Sequences: 438
Number of extensions: 2953
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)