Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31050
         (547 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    47   7e-06
At3g60190.1 68416.m06724 dynamin-like protein E (DL1E) nearly id...    29   2.7  
At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical...    28   4.7  
At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal hydrolase-r...    27   6.2  
At1g69750.1 68414.m08026 cox19 family protein contains Pfam prof...    27   8.2  
At1g66590.2 68414.m07567 cox19 family protein contains Pfam prof...    27   8.2  
At1g66590.1 68414.m07566 cox19 family protein contains Pfam prof...    27   8.2  

>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/45 (44%), Positives = 29/45 (64%)
 Frame = +1

Query: 7   YYGKLALVFWKAGHCLFHAAALLKLFQLYREMKKNITQEELQKMA 141
           YY KL  +FW +   L+HA A  KLF L +   KN++Q++LQ +A
Sbjct: 276 YYSKLTEIFWISSSHLYHAYAWFKLFSLQKNFNKNLSQKDLQLIA 320


>At3g60190.1 68416.m06724 dynamin-like protein E (DL1E) nearly
           identical to dynamin-like protein E [Arabidopsis
           thaliana] GI:19423872; contains Pfam profiles PF01031:
           Dynamin central region, PF00350: Dynamin family,
           PF02212: Dynamin GTPase effector domain
          Length = 624

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 315 NVVSLASPQLQQLYSWLEVEFDPLTICINVKGVIKSLQDEPNSSLAQYTNALKDVA 482
           NVV+L    L  L   + VE  P TI  +++ ++++  D+PN  +   + A +D+A
Sbjct: 140 NVVNLTLIDLPGLTK-VAVEGQPETIAEDIESMVRTYVDKPNCIILAISPANQDIA 194


>At2g44590.3 68415.m05551 dynamin-like protein D (DL1D) identical to
           dynamin-like protein D [Arabidopsis thaliana]
           GI:19569770; contains Pfam profiles PF01031: Dynamin
           central region, PF00350: Dynamin family, PF02212:
           Dynamin GTPase effector domain
          Length = 612

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 315 NVVSLASPQLQQLYSWLEVEFDPLTICINVKGVIKSLQDEPNSSLAQYTNALKDVA 482
           NVV+L    L  L   + VE  P TI  +++ +++S  ++PN  +   + A +D+A
Sbjct: 135 NVVNLTLIDLPGLTK-VAVEGQPETIVEDIESMVRSYVEKPNCLILAISPANQDIA 189


>At1g65130.1 68414.m07384 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1086

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 279 TRASLLKDIVRLNVVSLASPQLQQLYSWLEVEFD 380
           +R SLLKD+V L+V    S  LQ +  +LE E +
Sbjct: 651 SRISLLKDLVSLSVFDYRSYILQPVKLYLEEELE 684


>At1g69750.1 68414.m08026 cox19 family protein contains Pfam profile
           PF05490: Cox19 protein
          Length = 98

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 371 GV*PSDHLH*CQGRYQIFAG*AKFIARSVHQC 466
           G+ P DHLH C    + + G  K  A    QC
Sbjct: 21  GIFPLDHLHECDAEKKEYLGCLKSSAHKSEQC 52


>At1g66590.2 68414.m07567 cox19 family protein contains Pfam profile
           PF05490: Cox19 protein
          Length = 113

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 371 GV*PSDHLH*CQGRYQIFAG*AKFIARSVHQC 466
           G+ P DHLH C    + + G  K  A    QC
Sbjct: 36  GIFPLDHLHECDAEKKEYLGCLKSSAHKSEQC 67


>At1g66590.1 68414.m07566 cox19 family protein contains Pfam profile
           PF05490: Cox19 protein
          Length = 98

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 371 GV*PSDHLH*CQGRYQIFAG*AKFIARSVHQC 466
           G+ P DHLH C    + + G  K  A    QC
Sbjct: 21  GIFPLDHLHECDAEKKEYLGCLKSSAHKSEQC 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,257,265
Number of Sequences: 28952
Number of extensions: 239330
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)