Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31048
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   141   8e-35
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   136   3e-33
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    66   5e-12
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    51   1e-07
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    28   1.2  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    27   2.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.8  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    26   3.7  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.0  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   5.0  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   6.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.7  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    25   8.7  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  141 bits (341), Expect = 8e-35
 Identities = 67/124 (54%), Positives = 77/124 (62%)
 Frame = +2

Query: 77  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
           MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG G 
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 257 TYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLYSGKEDAANNYARGHYTIGKEIVDLVLD 436
             P                       F    L +GKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 437 RIRK 448
           +IR+
Sbjct: 121 KIRR 124



 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 447 RLADQCTGLQGFLIFHSF 500
           R+AD C+GLQGFL+FHSF
Sbjct: 124 RIADNCSGLQGFLVFHSF 141


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  136 bits (328), Expect = 3e-33
 Identities = 70/129 (54%), Positives = 80/129 (62%), Gaps = 5/129 (3%)
 Frame = +2

Query: 77  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 241
           MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSE
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 242 TGAGSTYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLYSGKEDAANNYARGHYTIGKEIV 421
           TG G   P                       F    + +GKEDA+NNYARGHYT+GKE++
Sbjct: 60  TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119

Query: 422 DLVLDRIRK 448
           D VL+RIR+
Sbjct: 120 DSVLERIRR 128



 Score = 38.3 bits (85), Expect = 9e-04
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = +3

Query: 447 RLADQCTGLQGFLIFHSF 500
           R+AD C+GLQGFL+FHSF
Sbjct: 128 RMADNCSGLQGFLVFHSF 145


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 37/124 (29%), Positives = 53/124 (42%)
 Frame = +2

Query: 77  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N +F+E   G 
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 257 TYPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLYSGKEDAANNYARGHYTIGKEIVDLVLD 436
             P                     + F  +N+  G+  A N +A+GHYT G E+ D VLD
Sbjct: 59  YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118

Query: 437 RIRK 448
            +R+
Sbjct: 119 VVRR 122



 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +1

Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLIF 357
           ++VPRAV VDLEP  +D V++G +  LF P+ +I+
Sbjct: 58  KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIY 92


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
 Frame = +2

Query: 80  RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGST 259
           RE I++  GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++     
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 260 YPVXXXXXXXXXXXXXXXXAHTDSCFIQNNLYSGKE--DAANNYARGHYTIGKEIVDLVL 433
            P                     S +   N+   K    A NN+A G Y+  + I + ++
Sbjct: 61  IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119

Query: 434 DRI 442
           D I
Sbjct: 120 DMI 122


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 312 ADLINNSRFKIDEDS--TGYVLPAPVSLKKVLKESSP 208
           AD+IN SR+ ID  S  T +    P+SL    KE  P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 515 PVLPPKGVEDQESLQTGTLVSESCGFCPKPNLRFPFQWCSD 393
           PVLPP  + D E ++    V E     P PN   P  W  D
Sbjct: 235 PVLPPVEIYDPEDIKPADWVDEP--EIPDPNAVKPDDWDED 273


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 524 PQKPVLPPKGVEDQESLQTGTLVSESCGFCPKP 426
           P+KP LPP+       L +  L SE+    P P
Sbjct: 356 PEKPRLPPRPSHTLSELSSPALTSENLSSKPSP 388


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 345 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIW 178
           F    + +  S  +++N+ +  KID    GY      S K  + E +  P  +  G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 175 WPDAHRQDHRGWRRFFQHFLQR 240
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 279 DEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 169
           ++D T Y+ P P+   + L +++PP +V+ +G  P G
Sbjct: 834 EKDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 66  LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 188
           L+S        +L+ P SR++ P  S +  STASSL    P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 156 STASSLMARCPQTRPSGVETILSTLSSARP 245
           ST SSL +    ++PS   T  ST SSA P
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 130 ITDLDSGLANVYRDALTHFDLSF 62
           +T +D GLA  YRD  TH  + +
Sbjct: 146 VTMIDFGLAKKYRDFKTHVHIPY 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,420
Number of Sequences: 5004
Number of extensions: 57423
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)