Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS31046
(464 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 180 2e-44
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 87 1e-16
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 87 2e-16
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 73 4e-12
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 72 5e-12
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 69 7e-11
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 66 4e-10
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 65 6e-10
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 64 2e-09
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 63 3e-09
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 62 4e-09
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 61 1e-08
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 57 2e-07
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 54 2e-06
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 53 4e-06
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 53 4e-06
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 52 6e-06
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 51 1e-05
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 50 2e-05
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 48 8e-05
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 46 3e-04
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 46 4e-04
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 42 0.005
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 41 0.015
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 40 0.020
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.027
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 38 0.14
UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep... 36 0.57
UniRef50_UPI0000D9B719 Cluster: PREDICTED: similar to 60S riboso... 35 1.0
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 34 1.8
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 1.8
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 33 2.3
UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1; ... 32 5.4
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 32 5.4
UniRef50_Q3E226 Cluster: Ribosomal protein S6; n=2; Chloroflexus... 32 7.1
UniRef50_A5WAJ3 Cluster: Putative uncharacterized protein; n=1; ... 31 9.4
UniRef50_Q8SWB2 Cluster: Putative uncharacterized protein ECU02_... 31 9.4
UniRef50_O94332 Cluster: RNA polymerase I-specific transcription... 31 9.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 180 bits (437), Expect = 2e-44
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +2
Query: 2 PEKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNL 181
PEKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNL
Sbjct: 63 PEKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNL 122
Query: 182 KIGTVCILLAGRHAGKRVVLVGILPA 259
KIGTVCILLAGRHAGKRVVLVGILP+
Sbjct: 123 KIGTVCILLAGRHAGKRVVLVGILPS 148
Score = 116 bits (280), Expect = 2e-25
Identities = 55/69 (79%), Positives = 55/69 (79%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXX 435
SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF
Sbjct: 148 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTVK 207
Query: 436 XXEGDDIFA 462
EGDDIFA
Sbjct: 208 RKEGDDIFA 216
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 87.4 bits (207), Expect = 1e-16
Identities = 40/82 (48%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Frame = +2
Query: 5 EKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPN 178
+K K L V K +GG+KNGGTR V L++ +YPT++ R S G +PFS+HVR++R +
Sbjct: 84 KKEKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRAS 143
Query: 179 LKIGTVCILLAGRHAGKRVVLV 244
+ GT+ I+L GRH GKRVV +
Sbjct: 144 ITPGTILIILTGRHRGKRVVFL 165
Score = 68.1 bits (159), Expect = 9e-11
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = +1
Query: 253 ASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
ASGLLLVTGP N PLRR Q++VI TST+I + N K+PKH D YF
Sbjct: 169 ASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF 217
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 86.6 bits (205), Expect = 2e-16
Identities = 37/49 (75%), Positives = 43/49 (87%)
Frame = +1
Query: 253 ASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
ASGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H ND YF
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYF 187
Score = 84.6 bits (200), Expect = 9e-16
Identities = 45/83 (54%), Positives = 54/83 (65%)
Frame = +2
Query: 5 EKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 184
EK K VK+IGG KNGG RTV LK+ K+ YPT+ ++ FS+H R R NL
Sbjct: 56 EKAKVPIKKVKKIGGPKNGGERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLT 115
Query: 185 IGTVCILLAGRHAGKRVVLVGIL 253
GTV ILLAGRH GKRVVL+ +L
Sbjct: 116 PGTVLILLAGRHQGKRVVLLKVL 138
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 72.5 bits (170), Expect = 4e-12
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = +1
Query: 253 ASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
ASGLLLVTGPF +N PLRR+ QRYVI T TRI + N K+P ND++F
Sbjct: 122 ASGLLLVTGPFKYNGVPLRRVNQRYVIATKTRIKIKNIKIPSQLNDEFF 170
Score = 39.9 bits (89), Expect = 0.027
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2
Query: 146 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 244
F+ H RRIR ++ G V ILLAGRH KRVV +
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFL 118
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 72.1 bits (169), Expect = 5e-12
Identities = 31/48 (64%), Positives = 37/48 (77%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGLLLVTGPF +N PLRR+ Q YVI TSTRI + F +PKH +D+YF
Sbjct: 117 SGLLLVTGPFKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF 164
Score = 46.4 bits (105), Expect = 3e-04
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = +2
Query: 77 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 247
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 248 IL 253
L
Sbjct: 114 AL 115
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 68.5 bits (160), Expect = 7e-11
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Frame = +2
Query: 5 EKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPN 178
++ +K V VK++ GEKNGG R +PLK+ + YPT++ + + +S +P S+ +R
Sbjct: 60 KRKRKKRVTVKRVKGEKNGGKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKR 119
Query: 179 LKIGTVCILLAGRHAGKRVVLV 244
+ GTV ILLAG H GKRVV +
Sbjct: 120 ITPGTVLILLAGPHRGKRVVFL 141
Score = 62.5 bits (145), Expect = 4e-09
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
+GLL VTGP+ N CPLRRI Q YVI TST++ L KLP+ +D YF
Sbjct: 146 TGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVKLPEGLDDRYF 193
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 66.1 bits (154), Expect = 4e-10
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGLLLV+GP N PLRR+ Q+ VI TSTRI + N K+P+H ND YF
Sbjct: 121 SGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEHINDTYF 168
Score = 65.7 bits (153), Expect = 5e-10
Identities = 35/80 (43%), Positives = 50/80 (62%)
Frame = +2
Query: 14 KKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGT 193
KK V+ K+IGG+KNGGTR V ++ FYP + + +K+ +IR +L+ GT
Sbjct: 40 KKPLVIEKKIGGDKNGGTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGT 99
Query: 194 VCILLAGRHAGKRVVLVGIL 253
+ ILLAG + GKRVVL+ L
Sbjct: 100 ILILLAGVNRGKRVVLLKAL 119
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 65.3 bits (152), Expect = 6e-10
Identities = 33/50 (66%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDD-YF 399
SGLLLVTGPF N PLRRIPQ YVI TST I + + KLP+H F D+ YF
Sbjct: 126 SGLLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADESYF 175
Score = 64.5 bits (150), Expect = 1e-09
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = +2
Query: 35 KQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAG 214
K IGG+KNGG R VP++R +YPT E +R R + ++R ++ GTV ILLAG
Sbjct: 54 KDIGGDKNGGKRVVPVQRESRYYPT-EDVRRRLANRK-KPGMAKLRSSITPGTVLILLAG 111
Query: 215 RHAGKRVVLV 244
H GKRVV +
Sbjct: 112 AHRGKRVVFL 121
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 63.7 bits (148), Expect = 2e-09
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGLLLVTGP N PLRRI Q +VI TS ++++ K+P+H ND+YF
Sbjct: 98 SGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF 145
Score = 37.1 bits (82), Expect = 0.19
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = +2
Query: 167 IRPNLKIGTVCILLAGRHAGKRVVLVGILP 256
+R L GTV I+LAGRH GKRVV + LP
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLP 96
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 62.9 bits (146), Expect = 3e-09
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = +1
Query: 253 ASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
ASGLLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161
Score = 37.5 bits (83), Expect = 0.14
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +2
Query: 77 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 244
P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 57 PVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFL 110
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 62.5 bits (145), Expect = 4e-09
Identities = 28/48 (58%), Positives = 34/48 (70%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGL+L+TGPF N PLRRI QRYVI TST+I + + K+ ND YF
Sbjct: 117 SGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYF 164
Score = 39.1 bits (87), Expect = 0.047
Identities = 26/76 (34%), Positives = 38/76 (50%)
Frame = +2
Query: 11 PKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 190
PKK+ V + G R + K K +IR+++ + K +R ++ G
Sbjct: 37 PKKVVAPVTPVEKTFGKGKRVIAAKASKFAPSIPAEIRSTAAKKVQQKVA--LRKSITPG 94
Query: 191 TVCILLAGRHAGKRVV 238
TV I+LAGR AGKRVV
Sbjct: 95 TVLIILAGRFAGKRVV 110
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 60.9 bits (141), Expect = 1e-08
Identities = 31/78 (39%), Positives = 46/78 (58%)
Frame = +2
Query: 11 PKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 190
P+ + ++ K IGG KNGG R VP K+ +YP +K + R ++RP++K G
Sbjct: 17 PEPIKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDK-KTPVPSRKNVHKPTKLRPSIKSG 75
Query: 191 TVCILLAGRHAGKRVVLV 244
T+ ILLAG G RVV++
Sbjct: 76 TIVILLAGVFRGSRVVVL 93
Score = 49.6 bits (113), Expect = 3e-05
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SG LLVTGP+A N PL R+ QRYVI TST I + + K ++ YF
Sbjct: 98 SGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDV-KKIDNAYF 144
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 56.8 bits (131), Expect = 2e-07
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGLLLVTGPF N P+RR+ Q YVI TST++ + + K F+D YF
Sbjct: 104 SGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF 150
Score = 35.9 bits (79), Expect = 0.43
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 98 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLV 244
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV +
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFL 99
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 54.0 bits (124), Expect = 2e-06
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +1
Query: 253 ASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
+SGLLL+TG F N PLRR+ Q YVI TST++ + + K F+D YF
Sbjct: 165 SSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDIPKVNVEK-FDDKYF 212
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 52.8 bits (121), Expect = 4e-06
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 351
SGLLLVTGPF+FN PLRR+ RYVI TST +
Sbjct: 70 SGLLLVTGPFSFNGVPLRRVNSRYVIATSTNV 101
Score = 39.5 bits (88), Expect = 0.035
Identities = 25/60 (41%), Positives = 35/60 (58%)
Frame = +2
Query: 74 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 253
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 52.8 bits (121), Expect = 4e-06
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGLLLVTGPF N PL+R+ YVI TST++ + NDDYF
Sbjct: 84 SGLLLVTGPFKINGVPLKRVNSAYVIPTSTKVDVTGVN-ANQINDDYF 130
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 52.0 bits (119), Expect = 6e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGL++VTGP+A N P+RR+ Y+I TST++ + + K F D+YF
Sbjct: 65 SGLVVVTGPYALNGVPVRRVNPAYIIATSTKVDVSKADVSK-FTDEYF 111
Score = 40.3 bits (90), Expect = 0.020
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +2
Query: 122 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPA 259
R S R S ++R +L+ G VCILLAG + GKRVV++ LP+
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPS 65
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 51.2 bits (117), Expect = 1e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +1
Query: 262 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
L GPF+ N P+RRI Q++V+ TST+I + K+P DDYF
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDVSGVKIPATMTDDYF 55
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 50.0 bits (114), Expect = 2e-05
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +1
Query: 265 LLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
LL++GPF N PLRR+ RYVI TST++S+ + K FN +YF
Sbjct: 63 LLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEK-FNVEYF 106
Score = 33.9 bits (74), Expect = 1.8
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 83 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 238
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVV 53
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 48.4 bits (110), Expect = 8e-05
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 399
SGLLLVTGP A N PL R+ Q VI T T++ + K KH D F
Sbjct: 35 SGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVKTSKHLTDASF 82
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 46.4 bits (105), Expect = 3e-04
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 259 GLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 357
G+LLVTGPF N PLRR+ RYVI TS ++ L
Sbjct: 66 GVLLVTGPFKINGVPLRRVNARYVIATSQKVDL 98
Score = 35.1 bits (77), Expect = 0.76
Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 140 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGIL 253
RP K +R P + GTV ILLAGR GKRVVL+ L
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKAL 63
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 46.0 bits (104), Expect = 4e-04
Identities = 20/33 (60%), Positives = 24/33 (72%)
Frame = +1
Query: 259 GLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 357
G+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 85 GVLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
Score = 45.6 bits (103), Expect = 5e-04
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = +2
Query: 23 TVVVKQIGGEKN--GGTRTVPLKRRKS--FYPTQEKIRASSGGRPFSKHVRRIRPNLKIG 190
T+ K +G K G R +P +K+ +YP ++ + + + H ++RP+L+ G
Sbjct: 4 TLDSKSVGQTKKFGKGERVIPHPSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPG 61
Query: 191 TVCILLAGRHAGKRVVLV 244
T+ ILLAGR GKRV+L+
Sbjct: 62 TILILLAGRFRGKRVILL 79
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 42.3 bits (95), Expect = 0.005
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGN 363
+G L+V+GP +N P+RRI RYVI TST + + +
Sbjct: 60 NGPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISS 95
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 40.7 bits (91), Expect = 0.015
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1
Query: 256 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 351
SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 100 SGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
Score = 37.9 bits (84), Expect = 0.11
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Frame = +2
Query: 14 KKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEK--IRASSGGRPFS---KHV--RRIR 172
K+ VV G +KN V ++K P + K I GR + K V R++R
Sbjct: 12 KETKSVVPATGDKKNALKHYVIKGQKKILTPVRAKKTISKKHYGRKLASKKKFVVQRKMR 71
Query: 173 PNLKIGTVCILLAGRHAGKRVVLVGIL 253
++++G V I+L G+H GKR ++ +L
Sbjct: 72 SSIQVGKVAIILTGKHMGKRCIIAKVL 98
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 40.3 bits (90), Expect = 0.020
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +2
Query: 5 EKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 184
+K K + V+K + G+KNGGT V L++ K + + + + S P KH + + N
Sbjct: 81 KKEKVVATVIKTVSGDKNGGTGVVKLQKMKMYLGSCKAMAKS----PAFKHEKAV-CNST 135
Query: 185 IGTVCILLAGRHAGKRVVLV 244
TV I++ G+H +RVV +
Sbjct: 136 PETVLIIITGQH--RRVVFL 153
Score = 31.9 bits (69), Expect = 7.1
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 259 GLLLVTGPFAFNSCPLRRIPQRYVIGTSTRIS 354
G LL+TGP A N L R Q+ V+ TST I+
Sbjct: 159 GFLLITGPLALNLVLLYRTHQKSVVITSTTIN 190
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.027
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 170 RPNLKIGTVCILLAGRHAGKRVVLVGILP 256
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 37.5 bits (83), Expect = 0.14
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +2
Query: 170 RPNLKIGTVCILLAGRHAGKRVVLV 244
RP+LK+GTV I++ G H GKR V+V
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVV 77
>UniRef50_Q7NID4 Cluster: Gll2249 protein; n=8; Cyanobacteria|Rep:
Gll2249 protein - Gloeobacter violaceus
Length = 544
Score = 35.5 bits (78), Expect = 0.57
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +1
Query: 226 QEGCTCWNSASGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDD 393
QE TC GL+L F S PL Q + +G +T +G LP+HFNDD
Sbjct: 41 QEIVTCGQVLKGLIL--NGLGFVSAPLYLFEQ-FFVGKATEHLIGPGVLPEHFNDD 93
>UniRef50_UPI0000D9B719 Cluster: PREDICTED: similar to 60S ribosomal
protein L6 (TAX-responsive enhancer element-binding
protein 107) (TAXREB107) (Neoplasm-related protein
C140); n=1; Macaca mulatta|Rep: PREDICTED: similar to
60S ribosomal protein L6 (TAX-responsive enhancer
element-binding protein 107) (TAXREB107)
(Neoplasm-related protein C140) - Macaca mulatta
Length = 109
Score = 34.7 bits (76), Expect = 1.0
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 5 EKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKI 121
EK K L V K +GG+KNGG V L + ++PT + +
Sbjct: 42 EKEKVLATVTKPVGGDKNGGAPVVKL-HKMPYHPTGDVV 79
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.9 bits (74), Expect = 1.8
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -3
Query: 258 AGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 118
+ R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 395 SSRVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 33.9 bits (74), Expect = 1.8
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 53 KNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 184
K R LK SF P + + ASS GRP K +R+R LK
Sbjct: 128 KEDHNREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 33.5 bits (73), Expect = 2.3
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 173 PNLKIGTVCILLAGRHAGKRVVLVGIL 253
P +++G VCI AGR AGK V+V IL
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDIL 28
>UniRef50_UPI000023DB34 Cluster: hypothetical protein FG02414.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG02414.1 - Gibberella zeae PH-1
Length = 607
Score = 32.3 bits (70), Expect = 5.4
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +2
Query: 80 LKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCI--LLAGRHAGKRVVLVGIL 253
L+ R +F P+Q KI + F++HV R+R NL+I I L+A + GK V+ GIL
Sbjct: 431 LESRDAF-PSQIKIPCKAELASFTRHVERVRKNLEIRVTQIESLIAWLNEGK-VLFDGIL 488
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 32.3 bits (70), Expect = 5.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 262 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 357
+ L GP + N PL RI +RY++ TST + L
Sbjct: 55 IALCAGPKSINGIPLFRIDERYLLATSTVLDL 86
>UniRef50_Q3E226 Cluster: Ribosomal protein S6; n=2;
Chloroflexus|Rep: Ribosomal protein S6 - Chloroflexus
aurantiacus J-10-fl
Length = 145
Score = 31.9 bits (69), Expect = 7.1
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 17 KLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSK 154
++ V+Q+GG+ N +++ P RRK YP +E + + R F++
Sbjct: 40 RIRQTVEQLGGKINTVSQSSPWGRRKLAYPIREYVTGEASRRKFTE 85
>UniRef50_A5WAJ3 Cluster: Putative uncharacterized protein; n=1;
Pseudomonas putida F1|Rep: Putative uncharacterized
protein - Pseudomonas putida F1
Length = 572
Score = 31.5 bits (68), Expect = 9.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 161 RRIRPNLKIGTVCILLAGRHAGKRVVLVGI 250
R +R + +GTV +L+ G +AGK VL GI
Sbjct: 13 RVVRAEINLGTVNVLVGGNNAGKSSVLQGI 42
>UniRef50_Q8SWB2 Cluster: Putative uncharacterized protein
ECU02_1110; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU02_1110 - Encephalitozoon
cuniculi
Length = 835
Score = 31.5 bits (68), Expect = 9.4
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +2
Query: 5 EKPKKLTVVVKQIGGEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 184
E PKKL ++K+ ++ G + + ++ TQ+K + S+ PF+ H R +RPN K
Sbjct: 778 EIPKKLKALLKE--RKRRGHQPILQITKKNDVMITQKKKKQST---PFTGHRRTVRPNKK 832
>UniRef50_O94332 Cluster: RNA polymerase I-specific transcription
initiation factor rrn11; n=1; Schizosaccharomyces
pombe|Rep: RNA polymerase I-specific transcription
initiation factor rrn11 - Schizosaccharomyces pombe
(Fission yeast)
Length = 200
Score = 31.5 bits (68), Expect = 9.4
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -3
Query: 294 IESKRSSN*KQTAGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIF 115
++ KRS+ ++ P S+ + P LP+RR +T I L ++ CLL P +R F
Sbjct: 7 VKEKRST--LRSVAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAF 64
Query: 114 S 112
S
Sbjct: 65 S 65
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,446,378
Number of Sequences: 1657284
Number of extensions: 10140623
Number of successful extensions: 25980
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 25202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25970
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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