Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS31046
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    45   5e-06
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.065
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   3.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.5  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   9.9  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
 Frame = +2

Query: 38  QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 202
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 203 LLAGRHAGKRVVLVGIL 253
           LLAGR  GKRVV++  L
Sbjct: 60  LLAGRFRGKRVVVLSQL 76



 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 265 LLVTGPFAFNSCPLRRIPQRYVIGTST-RISLGNFKLPKHFNDDYF 399
           L+VTGP+  N  P+RR+  RYVI TS  +I +    + K F   YF
Sbjct: 80  LVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEK-FTKAYF 124


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.5 bits (68), Expect = 0.065
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -3

Query: 294 IESKRSSN*KQTAGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIF 115
           ++ KRS+   ++    P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R F
Sbjct: 7   VKEKRST--LRSVAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAF 64

Query: 114 S 112
           S
Sbjct: 65  S 65


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +1

Query: 169 PTQPEDRNCLHSPR----W*TCRQEGCTCWNSASGLLLVTGPFAFNSCPLRRIPQRYVIG 336
           P  P+DRN          +    QEG T WNS +  L  T P A  S        R+V+G
Sbjct: 321 PLDPKDRNAWEESELKKLYTLVEQEG-TRWNSIANKL-GTSPAACMS------QWRFVVG 372

Query: 337 TSTRISLGNFKL 372
           TST+ ++   KL
Sbjct: 373 TSTQETIDRRKL 384


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 347 EFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMT 454
           + HS+ S+ +NT+ +++S   +S+ +V+     V T
Sbjct: 735 DLHSSLSDAKNTNAILSSELTKSSEDVKRLTANVET 770


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 284 KGPVTKSRPLAEFQQVQPSCLHVYQRGECKQFLSS 180
           K PV  SR ++   ++   C+++Y RG      SS
Sbjct: 19  KTPVYISRSISILNKIFHPCMYIYSRGITNDTYSS 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,941,680
Number of Sequences: 5004
Number of extensions: 40574
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)